Cluster: Rep_2185_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2185
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_715 | 737100 | 738212 | - | GH172 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_716 | 738321 | 739175 | - | 3.A.1.1.17 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_717 | 739187 | 740065 | - | 3.A.1.1.41 |
| STP | Rep_2185_c_0 | Rep_2185_c_0_718 | 740215 | 741468 | - | SBP_bac_1 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_719 | 741748 | 743577 | + | 8.A.59.2.1 |
Gene ID: Rep_2185_c_0_715
Type: CAZyme
Location: 737100 - 738212 (-)
Type: CAZyme
Location: 737100 - 738212 (-)
Gene ID: Rep_2185_c_0_716
Type: TC
Location: 738321 - 739175 (-)
Type: TC
Location: 738321 - 739175 (-)
Gene ID: Rep_2185_c_0_717
Type: TC
Location: 739187 - 740065 (-)
Type: TC
Location: 739187 - 740065 (-)
Gene ID: Rep_2185_c_0_718
Type: STP
Location: 740215 - 741468 (-)
Type: STP
Location: 740215 - 741468 (-)
Gene ID: Rep_2185_c_0_719
Type: TC
Location: 741748 - 743577 (+)
Type: TC
Location: 741748 - 743577 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter rectalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2185_c_0_715 | vegan > omnivore | 2.09905 | 0.01257 |
| Rep_2185_c_0_716 | vegan > omnivore | 1.61439 | 0.04965 |
| Rep_2185_c_0_718 | vegan > omnivore | 1.60437 | 0.02085 |