Cluster: Rep_2185_CGC41
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2185
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_3196 | 3438341 | 3439168 | - | GT2 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_3197 | 3439195 | 3439884 | - | 9.B.18.1.3 |
| STP | Rep_2185_c_0 | Rep_2185_c_0_3198 | 3439877 | 3441094 | - | Aminotran_1_2 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_3199 | 3441174 | 3443120 | - | 9.B.18.2.1 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_3200 | 3443271 | 3443690 | - | GtrA_DPMS_TM |
| TC | Rep_2185_c_0 | Rep_2185_c_0_3201 | 3443821 | 3445287 | + | 2.A.66.2.16 |
Gene ID: Rep_2185_c_0_3196
Type: CAZyme
Location: 3438341 - 3439168 (-)
Type: CAZyme
Location: 3438341 - 3439168 (-)
Gene ID: Rep_2185_c_0_3197
Type: TC
Location: 3439195 - 3439884 (-)
Type: TC
Location: 3439195 - 3439884 (-)
Gene ID: Rep_2185_c_0_3198
Type: STP
Location: 3439877 - 3441094 (-)
Type: STP
Location: 3439877 - 3441094 (-)
Gene ID: Rep_2185_c_0_3199
Type: TC
Location: 3441174 - 3443120 (-)
Type: TC
Location: 3441174 - 3443120 (-)
Gene ID: Rep_2185_c_0_3200
Type: pfam
Location: 3443271 - 3443690 (-)
Type: pfam
Location: 3443271 - 3443690 (-)
Gene ID: Rep_2185_c_0_3201
Type: TC
Location: 3443821 - 3445287 (+)
Type: TC
Location: 3443821 - 3445287 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter rectalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2185_c_0_3196 | vegetarian > vegan | 1.39075 | 0.00557 |
| Rep_2185_c_0_3197 | vegetarian > vegan | 1.61819 | 0.00557 |
| Rep_2185_c_0_3198 | vegetarian > vegan | 2.69822 | 0.00557 |
| Rep_2185_c_0_3199 | vegetarian > vegan | 1.41394 | 0.00557 |
| Rep_2185_c_0_3200 | vegetarian > vegan | 2.15374 | 0.00557 |
| Rep_2185_c_0_3201 | vegetarian > vegan | 1.64887 | 0.00557 |