Cluster: Rep_2185_CGC3
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2185
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2185_c_0 | Rep_2185_c_0_56 | 63833 | 65221 | + | 2.A.38.1.1 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_57 | 65234 | 66733 | + | 2.A.38.1.1 |
| NULL(UNKNOWN) | Rep_2185_c_0 | Rep_2185_c_0_58 | 66720 | 68360 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_59 | 68353 | 69201 | + | TPM_phosphatase |
| TC | Rep_2185_c_0 | Rep_2185_c_0_60 | 69399 | 70478 | + | 8.A.59.4.1 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_61 | 70781 | 71644 | - | ABC_trans_CmpB |
| TC | Rep_2185_c_0 | Rep_2185_c_0_62 | 71714 | 72766 | - | 3.A.1.120.6 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_63 | 72763 | 73614 | - | 3.A.1.120.1 |
| NULL(UNKNOWN) | Rep_2185_c_0 | Rep_2185_c_0_64 | 73617 | 73841 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2185_c_0 | Rep_2185_c_0_65 | 74106 | 74951 | - | 3.A.1.1.20 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_66 | 74951 | 75922 | - | 3.A.1.1.48 |
| NULL(UNKNOWN) | Rep_2185_c_0 | Rep_2185_c_0_67 | 75992 | 77377 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_2185_c_0 | Rep_2185_c_0_68 | 77566 | 78306 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_69 | 78425 | 81127 | - | GH94 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_70 | 81218 | 83629 | - | GH94 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_71 | 83904 | 87032 | - | CBM4 | CBM4 | GH16_3 |
| TF | Rep_2185_c_0 | Rep_2185_c_0_72 | 87184 | 88014 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_73 | 88300 | 90744 | + | GH3 |
Gene ID: Rep_2185_c_0_56
Type: TC
Location: 63833 - 65221 (+)
Type: TC
Location: 63833 - 65221 (+)
Gene ID: Rep_2185_c_0_57
Type: TC
Location: 65234 - 66733 (+)
Type: TC
Location: 65234 - 66733 (+)
Gene ID: Rep_2185_c_0_58
Type:
Location: 66720 - 68360 (+)
Type:
Location: 66720 - 68360 (+)
Gene ID: Rep_2185_c_0_59
Type: pfam
Location: 68353 - 69201 (+)
Type: pfam
Location: 68353 - 69201 (+)
Gene ID: Rep_2185_c_0_60
Type: TC
Location: 69399 - 70478 (+)
Type: TC
Location: 69399 - 70478 (+)
Gene ID: Rep_2185_c_0_61
Type: pfam
Location: 70781 - 71644 (-)
Type: pfam
Location: 70781 - 71644 (-)
Gene ID: Rep_2185_c_0_62
Type: TC
Location: 71714 - 72766 (-)
Type: TC
Location: 71714 - 72766 (-)
Gene ID: Rep_2185_c_0_63
Type: TC
Location: 72763 - 73614 (-)
Type: TC
Location: 72763 - 73614 (-)
Gene ID: Rep_2185_c_0_64
Type:
Location: 73617 - 73841 (-)
Type:
Location: 73617 - 73841 (-)
Gene ID: Rep_2185_c_0_65
Type: TC
Location: 74106 - 74951 (-)
Type: TC
Location: 74106 - 74951 (-)
Gene ID: Rep_2185_c_0_66
Type: TC
Location: 74951 - 75922 (-)
Type: TC
Location: 74951 - 75922 (-)
Gene ID: Rep_2185_c_0_67
Type:
Location: 75992 - 77377 (-)
Type:
Location: 75992 - 77377 (-)
Gene ID: Rep_2185_c_0_68
Type: TF
Location: 77566 - 78306 (+)
Type: TF
Location: 77566 - 78306 (+)
Gene ID: Rep_2185_c_0_69
Type: CAZyme
Location: 78425 - 81127 (-)
Type: CAZyme
Location: 78425 - 81127 (-)
Gene ID: Rep_2185_c_0_70
Type: CAZyme
Location: 81218 - 83629 (-)
Type: CAZyme
Location: 81218 - 83629 (-)
Gene ID: Rep_2185_c_0_71
Type: CAZyme
Location: 83904 - 87032 (-)
Type: CAZyme
Location: 83904 - 87032 (-)
Gene ID: Rep_2185_c_0_72
Type: TF
Location: 87184 - 88014 (-)
Type: TF
Location: 87184 - 88014 (-)
Gene ID: Rep_2185_c_0_73
Type: CAZyme
Location: 88300 - 90744 (+)
Type: CAZyme
Location: 88300 - 90744 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter rectalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.