Cluster: Rep_2185_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2185
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1971 | 2082528 | 2085611 | + | GH2 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1972 | 2085735 | 2086844 | + | GH53 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_1973 | 2087014 | 2088183 | + | GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_1974 | 2088251 | 2089786 | + | GalP_UDP_transf | GalP_UDP_tr_C |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1975 | 2090109 | 2091476 | - | 2.A.66.1.33 |
Gene ID: Rep_2185_c_0_1971
Type: CAZyme
Location: 2082528 - 2085611 (+)
Type: CAZyme
Location: 2082528 - 2085611 (+)
Gene ID: Rep_2185_c_0_1972
Type: CAZyme
Location: 2085735 - 2086844 (+)
Type: CAZyme
Location: 2085735 - 2086844 (+)
Gene ID: Rep_2185_c_0_1973
Type: pfam
Location: 2087014 - 2088183 (+)
Type: pfam
Location: 2087014 - 2088183 (+)
Gene ID: Rep_2185_c_0_1974
Type: pfam
Location: 2088251 - 2089786 (+)
Type: pfam
Location: 2088251 - 2089786 (+)
Gene ID: Rep_2185_c_0_1975
Type: TC
Location: 2090109 - 2091476 (-)
Type: TC
Location: 2090109 - 2091476 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter rectalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.