Cluster: Rep_2185_CGC23
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2185
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2185_c_0 | Rep_2185_c_0_1852 | 1965803 | 1967065 | + | 3.A.1.1.16 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1853 | 1967122 | 1968015 | + | 3.A.1.1.22 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1854 | 1968008 | 1968853 | + | 3.A.1.1.6 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1855 | 1968861 | 1970627 | + | CBM34 | GH13_20 |
Gene ID: Rep_2185_c_0_1852
Type: TC
Location: 1965803 - 1967065 (+)
Type: TC
Location: 1965803 - 1967065 (+)
Gene ID: Rep_2185_c_0_1853
Type: TC
Location: 1967122 - 1968015 (+)
Type: TC
Location: 1967122 - 1968015 (+)
Gene ID: Rep_2185_c_0_1854
Type: TC
Location: 1968008 - 1968853 (+)
Type: TC
Location: 1968008 - 1968853 (+)
Gene ID: Rep_2185_c_0_1855
Type: CAZyme
Location: 1968861 - 1970627 (+)
Type: CAZyme
Location: 1968861 - 1970627 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter rectalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2185_c_0_1852 | vegan > omnivore | 1.12497 | 0.02085 |
| Rep_2185_c_0_1852 | vegetarian > omnivore | 1.63705 | 0.00441 |
| Rep_2185_c_0_1853 | vegan > omnivore | 1.19466 | 0.02085 |
| Rep_2185_c_0_1853 | vegetarian > omnivore | 1.37023 | 0.00441 |
| Rep_2185_c_0_1854 | vegan > omnivore | 1.44912 | 0.02085 |
| Rep_2185_c_0_1854 | vegetarian > omnivore | 1.57745 | 0.00441 |