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Cluster: Rep_2185_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2185_c_0 Rep_2185_c_0_29 33014 34261 - GH3
pfam Rep_2185_c_0 Rep_2185_c_0_30 34264 35334 - LytR_cpsA_psr
TC Rep_2185_c_0 Rep_2185_c_0_31 35374 36099 - 8.A.3.2.2
TC Rep_2185_c_0 Rep_2185_c_0_32 36099 36881 - 8.A.3.2.3
peptidase Rep_2185_c_0 Rep_2185_c_0_33 37110 39182 - C82.UPA
CAZyme Rep_2185_c_0 Rep_2185_c_0_34 39335 40396 - GT2
CAZyme Rep_2185_c_0 Rep_2185_c_0_35 40478 41605 - GT2
CAZyme Rep_2185_c_0 Rep_2185_c_0_36 41678 42673 - GT2
Gene ID: Rep_2185_c_0_29
Type: CAZyme
Location: 33014 - 34261 (-)
Gene ID: Rep_2185_c_0_30
Type: pfam
Location: 34264 - 35334 (-)
Gene ID: Rep_2185_c_0_31
Type: TC
Location: 35374 - 36099 (-)
Gene ID: Rep_2185_c_0_32
Type: TC
Location: 36099 - 36881 (-)
Gene ID: Rep_2185_c_0_33
Type: peptidase
Location: 37110 - 39182 (-)
Gene ID: Rep_2185_c_0_34
Type: CAZyme
Location: 39335 - 40396 (-)
Gene ID: Rep_2185_c_0_35
Type: CAZyme
Location: 40478 - 41605 (-)
Gene ID: Rep_2185_c_0_36
Type: CAZyme
Location: 41678 - 42673 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2185_c_0_34 vegetarian > vegan 2.35626 0.00557
Rep_2185_c_0_35 vegetarian > vegan 2.10521 0.00557

🧭 Explore Read Mapping of CGC

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