Cluster: Rep_2178_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: Rep_2178
- CGC Family ID: CGCFAM_00045
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2178_c_3 | Rep_2178_c_3_137 | 142637 | 144625 | - | CBM20 | GH13_1 |
| CAZyme | Rep_2178_c_3 | Rep_2178_c_3_138 | 144622 | 146379 | - | CBM34 | GH13_20 |
| TC | Rep_2178_c_3 | Rep_2178_c_3_139 | 146396 | 147241 | - | 3.A.1.1.2 |
| TC | Rep_2178_c_3 | Rep_2178_c_3_140 | 147245 | 148129 | - | 3.A.1.1.2 |
| TC | Rep_2178_c_3 | Rep_2178_c_3_141 | 148154 | 149446 | - | 3.A.1.1.16 |
Gene ID: Rep_2178_c_3_137
Type: CAZyme
Location: 142637 - 144625 (-)
Type: CAZyme
Location: 142637 - 144625 (-)
Gene ID: Rep_2178_c_3_138
Type: CAZyme
Location: 144622 - 146379 (-)
Type: CAZyme
Location: 144622 - 146379 (-)
Gene ID: Rep_2178_c_3_139
Type: TC
Location: 146396 - 147241 (-)
Type: TC
Location: 146396 - 147241 (-)
Gene ID: Rep_2178_c_3_140
Type: TC
Location: 147245 - 148129 (-)
Type: TC
Location: 147245 - 148129 (-)
Gene ID: Rep_2178_c_3_141
Type: TC
Location: 148154 - 149446 (-)
Type: TC
Location: 148154 - 149446 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.