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Cluster: Rep_2178_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2178_c_2 Rep_2178_c_2_84 89506 92157 + 9.B.34.1.2
TF Rep_2178_c_2 Rep_2178_c_2_85 92544 93437 - HTH_AraC | HTH_AraC
CAZyme Rep_2178_c_2 Rep_2178_c_2_86 93558 96359 + GH3
TC Rep_2178_c_2 Rep_2178_c_2_87 96563 98251 + 3.A.1.1.29
TC Rep_2178_c_2 Rep_2178_c_2_88 98325 99281 + 3.A.1.1.29
TC Rep_2178_c_2 Rep_2178_c_2_89 99293 100186 + 3.A.1.1.29
CAZyme Rep_2178_c_2 Rep_2178_c_2_90 100206 101354 + GH8
CAZyme Rep_2178_c_2 Rep_2178_c_2_91 101362 102762 + GH43_35
CAZyme Rep_2178_c_2 Rep_2178_c_2_92 102813 104957 + GH3
TC Rep_2178_c_2 Rep_2178_c_2_93 105130 106752 + 3.A.1.1.29
CAZyme Rep_2178_c_2 Rep_2178_c_2_94 106773 108692 + CE1
CAZyme Rep_2178_c_2 Rep_2178_c_2_95 108689 111595 + GH115
CAZyme Rep_2178_c_2 Rep_2178_c_2_96 111687 113423 + CE17
CAZyme Rep_2178_c_2 Rep_2178_c_2_97 113441 115000 + CBM91 | GH43_12
TC Rep_2178_c_2 Rep_2178_c_2_98 115139 116896 + 8.A.59.2.1
Gene ID: Rep_2178_c_2_84
Type: TC
Location: 89506 - 92157 (+)
Gene ID: Rep_2178_c_2_85
Type: TF
Location: 92544 - 93437 (-)
Gene ID: Rep_2178_c_2_86
Type: CAZyme
Location: 93558 - 96359 (+)
Gene ID: Rep_2178_c_2_87
Type: TC
Location: 96563 - 98251 (+)
Gene ID: Rep_2178_c_2_88
Type: TC
Location: 98325 - 99281 (+)
Gene ID: Rep_2178_c_2_89
Type: TC
Location: 99293 - 100186 (+)
Gene ID: Rep_2178_c_2_90
Type: CAZyme
Location: 100206 - 101354 (+)
Gene ID: Rep_2178_c_2_91
Type: CAZyme
Location: 101362 - 102762 (+)
Gene ID: Rep_2178_c_2_92
Type: CAZyme
Location: 102813 - 104957 (+)
Gene ID: Rep_2178_c_2_93
Type: TC
Location: 105130 - 106752 (+)
Gene ID: Rep_2178_c_2_94
Type: CAZyme
Location: 106773 - 108692 (+)
Gene ID: Rep_2178_c_2_95
Type: CAZyme
Location: 108689 - 111595 (+)
Gene ID: Rep_2178_c_2_96
Type: CAZyme
Location: 111687 - 113423 (+)
Gene ID: Rep_2178_c_2_97
Type: CAZyme
Location: 113441 - 115000 (+)
Gene ID: Rep_2178_c_2_98
Type: TC
Location: 115139 - 116896 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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