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Cluster: Rep_2178_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2178_c_1 Rep_2178_c_1_166 179980 180948 + 3.A.1.1.29
TC Rep_2178_c_1 Rep_2178_c_1_167 180963 181805 + 3.A.1.1.29
CAZyme Rep_2178_c_1 Rep_2178_c_1_168 181822 182508 + CE12
TC Rep_2178_c_1 Rep_2178_c_1_169 182548 183912 + 2.A.66.1.26
NULL(UNKNOWN) Rep_2178_c_1 Rep_2178_c_1_170 183914 184636 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2178_c_1 Rep_2178_c_1_171 184652 186214 + GH28
Gene ID: Rep_2178_c_1_166
Type: TC
Location: 179980 - 180948 (+)
Gene ID: Rep_2178_c_1_167
Type: TC
Location: 180963 - 181805 (+)
Gene ID: Rep_2178_c_1_168
Type: CAZyme
Location: 181822 - 182508 (+)
Gene ID: Rep_2178_c_1_169
Type: TC
Location: 182548 - 183912 (+)
Gene ID: Rep_2178_c_1_170
Type:
Location: 183914 - 184636 (+)
Gene ID: Rep_2178_c_1_171
Type: CAZyme
Location: 184652 - 186214 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2178_c_1_166 vegan > omnivore 2.39475 0.02909
Rep_2178_c_1_166 vegetarian > omnivore 1.60228 0.00551
Rep_2178_c_1_167 vegan > omnivore 1.78854 0.02909

🧭 Explore Read Mapping of CGC

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