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Cluster: Rep_2178_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2178_c_1 Rep_2178_c_1_106 113774 116467 + 2.A.21.9.2
TC Rep_2178_c_1 Rep_2178_c_1_107 116627 118063 + 3.B.1.1.2
pfam Rep_2178_c_1 Rep_2178_c_1_108 118076 118792 + OAD_gamma
pfam Rep_2178_c_1 Rep_2178_c_1_109 118823 119194 + Biotin_lipoyl
TC Rep_2178_c_1 Rep_2178_c_1_110 119211 120359 + 3.B.1.1.3
TC Rep_2178_c_1 Rep_2178_c_1_111 120373 121791 + 3.B.1.1.6
TC Rep_2178_c_1 Rep_2178_c_1_112 121929 123734 + 3.A.1.106.2
CAZyme Rep_2178_c_1 Rep_2178_c_1_113 123809 124519 + GT2
Gene ID: Rep_2178_c_1_106
Type: TC
Location: 113774 - 116467 (+)
Gene ID: Rep_2178_c_1_107
Type: TC
Location: 116627 - 118063 (+)
Gene ID: Rep_2178_c_1_108
Type: pfam
Location: 118076 - 118792 (+)
Gene ID: Rep_2178_c_1_109
Type: pfam
Location: 118823 - 119194 (+)
Gene ID: Rep_2178_c_1_110
Type: TC
Location: 119211 - 120359 (+)
Gene ID: Rep_2178_c_1_111
Type: TC
Location: 120373 - 121791 (+)
Gene ID: Rep_2178_c_1_112
Type: TC
Location: 121929 - 123734 (+)
Gene ID: Rep_2178_c_1_113
Type: CAZyme
Location: 123809 - 124519 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2178_c_1_109 vegetarian > vegan 1.25840 0.00455

🧭 Explore Read Mapping of CGC

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