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Cluster: Rep_2178_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2178_c_25 Rep_2178_c_25_2 686 1561 + 3.A.1.1.45
TC Rep_2178_c_25 Rep_2178_c_25_3 1558 2400 + 3.A.1.1.28
CAZyme Rep_2178_c_25 Rep_2178_c_25_4 2436 5243 + GH36
CAZyme Rep_2178_c_25 Rep_2178_c_25_5 5233 6711 + GH13_18
NULL(UNKNOWN) Rep_2178_c_25 Rep_2178_c_25_6 6764 7135 - NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_2178_c_25 Rep_2178_c_25_7 7288 7845 - TetR_N
TC Rep_2178_c_25 Rep_2178_c_25_8 8218 9555 + 2.A.38.4.1
TC Rep_2178_c_25 Rep_2178_c_25_9 9575 10222 + 2.A.38.4.3
STP Rep_2178_c_25 Rep_2178_c_25_10 10326 12299 + HATPase_c | HisKA
TF Rep_2178_c_25 Rep_2178_c_25_11 12292 13005 + Trans_reg_C
TC Rep_2178_c_25 Rep_2178_c_25_12 13050 14003 - 1.A.1.24.5
STP Rep_2178_c_25 Rep_2178_c_25_13 14210 15337 + Fer4
TC Rep_2178_c_25 Rep_2178_c_25_14 15312 17438 + 2.A.53.1.8
TC Rep_2178_c_25 Rep_2178_c_25_15 17536 17913 + 1.E.14.1.4
TC Rep_2178_c_25 Rep_2178_c_25_16 17906 18598 + 2.A.122.1.4
Gene ID: Rep_2178_c_25_2
Type: TC
Location: 686 - 1561 (+)
Gene ID: Rep_2178_c_25_3
Type: TC
Location: 1558 - 2400 (+)
Gene ID: Rep_2178_c_25_4
Type: CAZyme
Location: 2436 - 5243 (+)
Gene ID: Rep_2178_c_25_5
Type: CAZyme
Location: 5233 - 6711 (+)
Gene ID: Rep_2178_c_25_6
Type:
Location: 6764 - 7135 (-)
Gene ID: Rep_2178_c_25_7
Type: STP
Location: 7288 - 7845 (-)
Gene ID: Rep_2178_c_25_8
Type: TC
Location: 8218 - 9555 (+)
Gene ID: Rep_2178_c_25_9
Type: TC
Location: 9575 - 10222 (+)
Gene ID: Rep_2178_c_25_10
Type: STP
Location: 10326 - 12299 (+)
Gene ID: Rep_2178_c_25_11
Type: TF
Location: 12292 - 13005 (+)
Gene ID: Rep_2178_c_25_12
Type: TC
Location: 13050 - 14003 (-)
Gene ID: Rep_2178_c_25_13
Type: STP
Location: 14210 - 15337 (+)
Gene ID: Rep_2178_c_25_14
Type: TC
Location: 15312 - 17438 (+)
Gene ID: Rep_2178_c_25_15
Type: TC
Location: 17536 - 17913 (+)
Gene ID: Rep_2178_c_25_16
Type: TC
Location: 17906 - 18598 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2178_c_25_8 vegan > omnivore 1.10126 0.02909
Rep_2178_c_25_9 vegan > omnivore 1.30366 0.02909
Rep_2178_c_25_10 vegan > omnivore 1.43278 0.02909
Rep_2178_c_25_11 vegan > omnivore 1.66418 0.02909
Rep_2178_c_25_13 vegetarian > vegan 1.37537 0.00455

🧭 Explore Read Mapping of CGC

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