Cluster: Rep_2178_CGC4
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2178
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2178_c_1 | Rep_2178_c_1_58 | 56023 | 57012 | + | 2.A.58.2.2 |
| pfam | Rep_2178_c_1 | Rep_2178_c_1_59 | 57012 | 57857 | + | VCA0040-like |
| CAZyme | Rep_2178_c_1 | Rep_2178_c_1_60 | 58002 | 58982 | + | CE4 |
Gene ID: Rep_2178_c_1_58
Type: TC
Location: 56023 - 57012 (+)
Type: TC
Location: 56023 - 57012 (+)
Gene ID: Rep_2178_c_1_59
Type: pfam
Location: 57012 - 57857 (+)
Type: pfam
Location: 57012 - 57857 (+)
Gene ID: Rep_2178_c_1_60
Type: CAZyme
Location: 58002 - 58982 (+)
Type: CAZyme
Location: 58002 - 58982 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.