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Cluster: Rep_2178_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2178_c_23 Rep_2178_c_23_12 14099 15037 - 3.A.1.2.12
TC Rep_2178_c_23 Rep_2178_c_23_13 15037 16131 - 3.A.1.2.12
TC Rep_2178_c_23 Rep_2178_c_23_14 16164 17705 - 3.A.1.2.17
pfam Rep_2178_c_23 Rep_2178_c_23_15 17812 18996 - Bmp
pfam Rep_2178_c_23 Rep_2178_c_23_16 19410 20303 + DUF5688
CAZyme Rep_2178_c_23 Rep_2178_c_23_17 20293 21738 - GT5
STP Rep_2178_c_23 Rep_2178_c_23_18 21818 22615 - Response_reg | Spo0A_C
TC Rep_2178_c_23 Rep_2178_c_23_19 22694 24199 - 9.B.34.1.3
TC Rep_2178_c_23 Rep_2178_c_23_20 24255 25604 - 2.A.22.5.3
Gene ID: Rep_2178_c_23_12
Type: TC
Location: 14099 - 15037 (-)
Gene ID: Rep_2178_c_23_13
Type: TC
Location: 15037 - 16131 (-)
Gene ID: Rep_2178_c_23_14
Type: TC
Location: 16164 - 17705 (-)
Gene ID: Rep_2178_c_23_15
Type: pfam
Location: 17812 - 18996 (-)
Gene ID: Rep_2178_c_23_16
Type: pfam
Location: 19410 - 20303 (+)
Gene ID: Rep_2178_c_23_17
Type: CAZyme
Location: 20293 - 21738 (-)
Gene ID: Rep_2178_c_23_18
Type: STP
Location: 21818 - 22615 (-)
Gene ID: Rep_2178_c_23_19
Type: TC
Location: 22694 - 24199 (-)
Gene ID: Rep_2178_c_23_20
Type: TC
Location: 24255 - 25604 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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