Cluster: Rep_2178_CGC37
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2178
- CGC Family ID: CGCFAM_08590
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2178_c_20 | Rep_2178_c_20_1 | 419 | 2554 | - | GH13_11 |
| pfam | Rep_2178_c_20 | Rep_2178_c_20_2 | 2551 | 3255 | - | Aldolase_II |
| CAZyme | Rep_2178_c_20 | Rep_2178_c_20_3 | 3458 | 4483 | + | CE8 |
| NULL(UNKNOWN) | Rep_2178_c_20 | Rep_2178_c_20_4 | 4550 | 4702 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2178_c_20 | Rep_2178_c_20_5 | 4699 | 5787 | - | GT111 |
| TC | Rep_2178_c_20 | Rep_2178_c_20_6 | 5784 | 6899 | - | 3.A.1.13.2 |
| TC | Rep_2178_c_20 | Rep_2178_c_20_7 | 6902 | 7864 | - | 3.A.1.13.2 |
Gene ID: Rep_2178_c_20_1
Type: CAZyme
Location: 419 - 2554 (-)
Type: CAZyme
Location: 419 - 2554 (-)
Gene ID: Rep_2178_c_20_2
Type: pfam
Location: 2551 - 3255 (-)
Type: pfam
Location: 2551 - 3255 (-)
Gene ID: Rep_2178_c_20_3
Type: CAZyme
Location: 3458 - 4483 (+)
Type: CAZyme
Location: 3458 - 4483 (+)
Gene ID: Rep_2178_c_20_4
Type:
Location: 4550 - 4702 (+)
Type:
Location: 4550 - 4702 (+)
Gene ID: Rep_2178_c_20_5
Type: CAZyme
Location: 4699 - 5787 (-)
Type: CAZyme
Location: 4699 - 5787 (-)
Gene ID: Rep_2178_c_20_6
Type: TC
Location: 5784 - 6899 (-)
Type: TC
Location: 5784 - 6899 (-)
Gene ID: Rep_2178_c_20_7
Type: TC
Location: 6902 - 7864 (-)
Type: TC
Location: 6902 - 7864 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.