Cluster: Rep_2178_CGC35
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2178
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2178_c_18 | Rep_2178_c_18_47 | 45404 | 46720 | - | 9.B.174.1.1 |
| STP | Rep_2178_c_18 | Rep_2178_c_18_48 | 46752 | 47957 | - | Peptidase_M23 |
| pfam | Rep_2178_c_18 | Rep_2178_c_18_49 | 47959 | 48867 | - | FtsX | FtsX_ECD |
| TC | Rep_2178_c_18 | Rep_2178_c_18_50 | 48857 | 49570 | - | 3.A.1.140.1 |
| pfam | Rep_2178_c_18 | Rep_2178_c_18_51 | 49606 | 50694 | - | HTH_30 | GGDEF_2 |
| CAZyme | Rep_2178_c_18 | Rep_2178_c_18_52 | 50903 | 51577 | - | GT26 |
Gene ID: Rep_2178_c_18_47
Type: TC
Location: 45404 - 46720 (-)
Type: TC
Location: 45404 - 46720 (-)
Gene ID: Rep_2178_c_18_48
Type: STP
Location: 46752 - 47957 (-)
Type: STP
Location: 46752 - 47957 (-)
Gene ID: Rep_2178_c_18_49
Type: pfam
Location: 47959 - 48867 (-)
Type: pfam
Location: 47959 - 48867 (-)
Gene ID: Rep_2178_c_18_50
Type: TC
Location: 48857 - 49570 (-)
Type: TC
Location: 48857 - 49570 (-)
Gene ID: Rep_2178_c_18_51
Type: pfam
Location: 49606 - 50694 (-)
Type: pfam
Location: 49606 - 50694 (-)
Gene ID: Rep_2178_c_18_52
Type: CAZyme
Location: 50903 - 51577 (-)
Type: CAZyme
Location: 50903 - 51577 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2178_c_18_50 | vegetarian > omnivore | 1.02715 | 0.00551 |
| Rep_2178_c_18_50 | vegetarian > vegan | 1.12250 | 0.00455 |