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Cluster: Rep_2178_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2178_c_16 Rep_2178_c_16_7 4811 6364 + GH13_44
pfam Rep_2178_c_16 Rep_2178_c_16_8 6384 7469 + LprI
TC Rep_2178_c_16 Rep_2178_c_16_9 7558 8418 + 2.A.7.2.1
TC Rep_2178_c_16 Rep_2178_c_16_10 8423 9754 - 2.A.66.1.37
TF Rep_2178_c_16 Rep_2178_c_16_11 9784 10245 - 0040517
TC Rep_2178_c_16 Rep_2178_c_16_12 10500 12056 + 3.A.1.11.8
TC Rep_2178_c_16 Rep_2178_c_16_13 12061 12852 + 3.A.1.11.2
TC Rep_2178_c_16 Rep_2178_c_16_14 12849 13637 + 3.A.1.11.7
TC Rep_2178_c_16 Rep_2178_c_16_15 13694 15220 + 3.A.1.11.7
pfam Rep_2178_c_16 Rep_2178_c_16_16 15303 18380 + Lant_dehydr_N | Lant_dehydr_C
TC Rep_2178_c_16 Rep_2178_c_16_17 18352 20163 + 3.A.1.111.2
Gene ID: Rep_2178_c_16_7
Type: CAZyme
Location: 4811 - 6364 (+)
Gene ID: Rep_2178_c_16_8
Type: pfam
Location: 6384 - 7469 (+)
Gene ID: Rep_2178_c_16_9
Type: TC
Location: 7558 - 8418 (+)
Gene ID: Rep_2178_c_16_10
Type: TC
Location: 8423 - 9754 (-)
Gene ID: Rep_2178_c_16_11
Type: TF
Location: 9784 - 10245 (-)
Gene ID: Rep_2178_c_16_12
Type: TC
Location: 10500 - 12056 (+)
Gene ID: Rep_2178_c_16_13
Type: TC
Location: 12061 - 12852 (+)
Gene ID: Rep_2178_c_16_14
Type: TC
Location: 12849 - 13637 (+)
Gene ID: Rep_2178_c_16_15
Type: TC
Location: 13694 - 15220 (+)
Gene ID: Rep_2178_c_16_16
Type: pfam
Location: 15303 - 18380 (+)
Gene ID: Rep_2178_c_16_17
Type: TC
Location: 18352 - 20163 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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