Cluster: Rep_2178_CGC32
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2178
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2178_c_14 | Rep_2178_c_14_61 | 62214 | 63053 | - | 3.A.1.1.27 |
| TC | Rep_2178_c_14 | Rep_2178_c_14_62 | 63050 | 64372 | - | 3.A.1.1.27 |
| STP | Rep_2178_c_14 | Rep_2178_c_14_63 | 64428 | 65897 | - | SBP_bac_1 |
| CAZyme | Rep_2178_c_14 | Rep_2178_c_14_64 | 65894 | 67663 | - | CBM34 | GH13_20 |
Gene ID: Rep_2178_c_14_61
Type: TC
Location: 62214 - 63053 (-)
Type: TC
Location: 62214 - 63053 (-)
Gene ID: Rep_2178_c_14_62
Type: TC
Location: 63050 - 64372 (-)
Type: TC
Location: 63050 - 64372 (-)
Gene ID: Rep_2178_c_14_63
Type: STP
Location: 64428 - 65897 (-)
Type: STP
Location: 64428 - 65897 (-)
Gene ID: Rep_2178_c_14_64
Type: CAZyme
Location: 65894 - 67663 (-)
Type: CAZyme
Location: 65894 - 67663 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2178_c_14_61 | vegan > omnivore | 1.69404 | 0.02909 |
| Rep_2178_c_14_61 | vegetarian > omnivore | 2.13396 | 0.00551 |