Cluster: Rep_2178_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate: galactan
- Genome ID: Rep_2178
- CGC Family ID: CGCFAM_00078
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2178_c_13 | Rep_2178_c_13_53 | 51341 | 53260 | + | GH2 |
| CAZyme | Rep_2178_c_13 | Rep_2178_c_13_54 | 53328 | 56342 | + | GH3 |
| TC | Rep_2178_c_13 | Rep_2178_c_13_55 | 56413 | 57948 | + | 2.A.2.3.2 |
| TC | Rep_2178_c_13 | Rep_2178_c_13_56 | 58028 | 60145 | + | 1.B.52.2.1 |
Gene ID: Rep_2178_c_13_53
Type: CAZyme
Location: 51341 - 53260 (+)
Type: CAZyme
Location: 51341 - 53260 (+)
Gene ID: Rep_2178_c_13_54
Type: CAZyme
Location: 53328 - 56342 (+)
Type: CAZyme
Location: 53328 - 56342 (+)
Gene ID: Rep_2178_c_13_55
Type: TC
Location: 56413 - 57948 (+)
Type: TC
Location: 56413 - 57948 (+)
Gene ID: Rep_2178_c_13_56
Type: TC
Location: 58028 - 60145 (+)
Type: TC
Location: 58028 - 60145 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.