Cluster: Rep_2178_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2178
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2178_c_0 | Rep_2178_c_0_182 | 216632 | 217330 | - | 3.A.1.122.2 |
| NULL(UNKNOWN) | Rep_2178_c_0 | Rep_2178_c_0_183 | 217349 | 217990 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2178_c_0 | Rep_2178_c_0_184 | 217999 | 219396 | - | 3.A.1.122.12 |
| pfam | Rep_2178_c_0 | Rep_2178_c_0_185 | 219393 | 220835 | - | HlyD_3 | HlyD_D23 |
| pfam | Rep_2178_c_0 | Rep_2178_c_0_186 | 220844 | 222391 | - | HlyD_3 |
| TC | Rep_2178_c_0 | Rep_2178_c_0_187 | 222554 | 224020 | - | 1.B.52.2.1 |
| STP | Rep_2178_c_0 | Rep_2178_c_0_188 | 224177 | 225844 | + | GGDEF | dCache_1 |
| TC | Rep_2178_c_0 | Rep_2178_c_0_189 | 225807 | 226271 | - | 9.A.11.1.1 |
| CAZyme | Rep_2178_c_0 | Rep_2178_c_0_190 | 226290 | 228548 | - | GH2 |
| pfam | Rep_2178_c_0 | Rep_2178_c_0_191 | 228608 | 228937 | - | DUF3837 |
| pfam | Rep_2178_c_0 | Rep_2178_c_0_192 | 229009 | 229431 | - | SpoVAB |
| TC | Rep_2178_c_0 | Rep_2178_c_0_193 | 229421 | 230074 | - | 9.A.11.1.1 |
| NULL(UNKNOWN) | Rep_2178_c_0 | Rep_2178_c_0_194 | 230065 | 230232 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2178_c_0 | Rep_2178_c_0_195 | 230363 | 231139 | + | 2.A.79.1.4 |
Gene ID: Rep_2178_c_0_182
Type: TC
Location: 216632 - 217330 (-)
Type: TC
Location: 216632 - 217330 (-)
Gene ID: Rep_2178_c_0_183
Type:
Location: 217349 - 217990 (-)
Type:
Location: 217349 - 217990 (-)
Gene ID: Rep_2178_c_0_184
Type: TC
Location: 217999 - 219396 (-)
Type: TC
Location: 217999 - 219396 (-)
Gene ID: Rep_2178_c_0_185
Type: pfam
Location: 219393 - 220835 (-)
Type: pfam
Location: 219393 - 220835 (-)
Gene ID: Rep_2178_c_0_186
Type: pfam
Location: 220844 - 222391 (-)
Type: pfam
Location: 220844 - 222391 (-)
Gene ID: Rep_2178_c_0_187
Type: TC
Location: 222554 - 224020 (-)
Type: TC
Location: 222554 - 224020 (-)
Gene ID: Rep_2178_c_0_188
Type: STP
Location: 224177 - 225844 (+)
Type: STP
Location: 224177 - 225844 (+)
Gene ID: Rep_2178_c_0_189
Type: TC
Location: 225807 - 226271 (-)
Type: TC
Location: 225807 - 226271 (-)
Gene ID: Rep_2178_c_0_190
Type: CAZyme
Location: 226290 - 228548 (-)
Type: CAZyme
Location: 226290 - 228548 (-)
Gene ID: Rep_2178_c_0_191
Type: pfam
Location: 228608 - 228937 (-)
Type: pfam
Location: 228608 - 228937 (-)
Gene ID: Rep_2178_c_0_192
Type: pfam
Location: 229009 - 229431 (-)
Type: pfam
Location: 229009 - 229431 (-)
Gene ID: Rep_2178_c_0_193
Type: TC
Location: 229421 - 230074 (-)
Type: TC
Location: 229421 - 230074 (-)
Gene ID: Rep_2178_c_0_194
Type:
Location: 230065 - 230232 (-)
Type:
Location: 230065 - 230232 (-)
Gene ID: Rep_2178_c_0_195
Type: TC
Location: 230363 - 231139 (+)
Type: TC
Location: 230363 - 231139 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.