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Cluster: Rep_2178_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2178_c_12 Rep_2178_c_12_6 7445 8158 - 3.A.1.12.10
NULL(UNKNOWN) Rep_2178_c_12 Rep_2178_c_12_7 8177 8674 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2178_c_12 Rep_2178_c_12_8 8891 10927 + GH133
NULL(UNKNOWN) Rep_2178_c_12 Rep_2178_c_12_9 11300 11950 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2178_c_12 Rep_2178_c_12_10 11953 12807 - YitT_membrane | DUF2179
CAZyme Rep_2178_c_12 Rep_2178_c_12_11 12974 14704 - GH13_36
TC Rep_2178_c_12 Rep_2178_c_12_12 14723 15595 - 3.A.1.1.27
TC Rep_2178_c_12 Rep_2178_c_12_13 15595 16968 - 3.A.1.1.27
pfam Rep_2178_c_12 Rep_2178_c_12_14 17083 18396 - SBP_bac_8
CAZyme Rep_2178_c_12 Rep_2178_c_12_15 18472 19965 - GH77
TF Rep_2178_c_12 Rep_2178_c_12_16 20239 21246 + LacI
pfam Rep_2178_c_12 Rep_2178_c_12_17 21225 22712 - DUF1846 | DUF1846_C
TC Rep_2178_c_12 Rep_2178_c_12_18 22825 25422 - 3.A.3.2.21
TC Rep_2178_c_12 Rep_2178_c_12_19 25738 28365 - 3.A.3.2.21
Gene ID: Rep_2178_c_12_6
Type: TC
Location: 7445 - 8158 (-)
Gene ID: Rep_2178_c_12_7
Type:
Location: 8177 - 8674 (-)
Gene ID: Rep_2178_c_12_8
Type: CAZyme
Location: 8891 - 10927 (+)
Gene ID: Rep_2178_c_12_9
Type:
Location: 11300 - 11950 (+)
Gene ID: Rep_2178_c_12_10
Type: pfam
Location: 11953 - 12807 (-)
Gene ID: Rep_2178_c_12_11
Type: CAZyme
Location: 12974 - 14704 (-)
Gene ID: Rep_2178_c_12_12
Type: TC
Location: 14723 - 15595 (-)
Gene ID: Rep_2178_c_12_13
Type: TC
Location: 15595 - 16968 (-)
Gene ID: Rep_2178_c_12_14
Type: pfam
Location: 17083 - 18396 (-)
Gene ID: Rep_2178_c_12_15
Type: CAZyme
Location: 18472 - 19965 (-)
Gene ID: Rep_2178_c_12_16
Type: TF
Location: 20239 - 21246 (+)
Gene ID: Rep_2178_c_12_17
Type: pfam
Location: 21225 - 22712 (-)
Gene ID: Rep_2178_c_12_18
Type: TC
Location: 22825 - 25422 (-)
Gene ID: Rep_2178_c_12_19
Type: TC
Location: 25738 - 28365 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2178_c_12_14 vegetarian > omnivore 1.00191 0.00551

🧭 Explore Read Mapping of CGC

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