dbCAN HGM

Cluster: Rep_2178_CGC28

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_2178_c_11	Rep_2178_c_11_55	59054	60313	-	2.A.49.9.2
TF	Rep_2178_c_11	Rep_2178_c_11_56	60505	60720	+	HTH_3
pfam	Rep_2178_c_11	Rep_2178_c_11_57	60710	61495	+	DUF3169
TC	Rep_2178_c_11	Rep_2178_c_11_58	61809	63251	+	3.A.1.1.45
TC	Rep_2178_c_11	Rep_2178_c_11_59	63314	64156	+	3.A.1.1.45
TC	Rep_2178_c_11	Rep_2178_c_11_60	64156	65025	+	3.A.1.1.45
TF	Rep_2178_c_11	Rep_2178_c_11_61	65119	66126	+	LacI
CAZyme	Rep_2178_c_11	Rep_2178_c_11_62	66153	67688	+	GH77

Gene ID: Rep_2178_c_11_55
Type: TC
Location: 59054 - 60313 (-)

Gene ID: Rep_2178_c_11_56
Type: TF
Location: 60505 - 60720 (+)

Gene ID: Rep_2178_c_11_57
Type: pfam
Location: 60710 - 61495 (+)

Gene ID: Rep_2178_c_11_58
Type: TC
Location: 61809 - 63251 (+)

Gene ID: Rep_2178_c_11_59
Type: TC
Location: 63314 - 64156 (+)

Gene ID: Rep_2178_c_11_60
Type: TC
Location: 64156 - 65025 (+)

Gene ID: Rep_2178_c_11_61
Type: TF
Location: 65119 - 66126 (+)

Gene ID: Rep_2178_c_11_62
Type: CAZyme
Location: 66153 - 67688 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_2178_c_11_56	vegetarian > omnivore	1.25329	0.00551
Rep_2178_c_11_56	vegetarian > vegan	3.63609	0.00455
Rep_2178_c_11_60	vegetarian > omnivore	1.01314	0.00551
Rep_2178_c_11_60	vegetarian > vegan	1.30961	0.00455

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_2178_c_11_56	vegan > omnivore	1.79342	0.00364