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Cluster: Rep_2178_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2178_c_11 Rep_2178_c_11_18 15396 17189 + 8.A.59.2.1
TC Rep_2178_c_11 Rep_2178_c_11_19 17358 18278 + 3.A.1.1.29
TC Rep_2178_c_11 Rep_2178_c_11_20 18292 19182 + 3.A.1.1.29
TC Rep_2178_c_11 Rep_2178_c_11_21 19231 20925 + 3.A.1.1.29
CAZyme Rep_2178_c_11 Rep_2178_c_11_22 21046 23097 + GH42
CAZyme Rep_2178_c_11 Rep_2178_c_11_23 23118 24590 + GH29
TF Rep_2178_c_11 Rep_2178_c_11_24 24591 26141 - HTH_AraC | HTH_AraC
CAZyme Rep_2178_c_11 Rep_2178_c_11_25 26300 28639 + GH31_3
CAZyme Rep_2178_c_11 Rep_2178_c_11_26 28685 30808 + GH3
Gene ID: Rep_2178_c_11_18
Type: TC
Location: 15396 - 17189 (+)
Gene ID: Rep_2178_c_11_19
Type: TC
Location: 17358 - 18278 (+)
Gene ID: Rep_2178_c_11_20
Type: TC
Location: 18292 - 19182 (+)
Gene ID: Rep_2178_c_11_21
Type: TC
Location: 19231 - 20925 (+)
Gene ID: Rep_2178_c_11_22
Type: CAZyme
Location: 21046 - 23097 (+)
Gene ID: Rep_2178_c_11_23
Type: CAZyme
Location: 23118 - 24590 (+)
Gene ID: Rep_2178_c_11_24
Type: TF
Location: 24591 - 26141 (-)
Gene ID: Rep_2178_c_11_25
Type: CAZyme
Location: 26300 - 28639 (+)
Gene ID: Rep_2178_c_11_26
Type: CAZyme
Location: 28685 - 30808 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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