Cluster: Rep_2178_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2178
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2178_c_7 | Rep_2178_c_7_88 | 113190 | 114089 | + | 3.A.1.1.4 |
| TC | Rep_2178_c_7 | Rep_2178_c_7_89 | 114082 | 114912 | + | 3.A.1.1.4 |
| CAZyme | Rep_2178_c_7 | Rep_2178_c_7_90 | 114987 | 118007 | + | GH2 |
| CAZyme | Rep_2178_c_7 | Rep_2178_c_7_91 | 118043 | 119212 | + | GH53 |
Gene ID: Rep_2178_c_7_88
Type: TC
Location: 113190 - 114089 (+)
Type: TC
Location: 113190 - 114089 (+)
Gene ID: Rep_2178_c_7_89
Type: TC
Location: 114082 - 114912 (+)
Type: TC
Location: 114082 - 114912 (+)
Gene ID: Rep_2178_c_7_90
Type: CAZyme
Location: 114987 - 118007 (+)
Type: CAZyme
Location: 114987 - 118007 (+)
Gene ID: Rep_2178_c_7_91
Type: CAZyme
Location: 118043 - 119212 (+)
Type: CAZyme
Location: 118043 - 119212 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.