Cluster: Rep_2178_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2178
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2178_c_7 | Rep_2178_c_7_79 | 101037 | 103052 | - | GH42 |
| TF | Rep_2178_c_7 | Rep_2178_c_7_80 | 103336 | 104337 | + | LacI |
| pfam | Rep_2178_c_7 | Rep_2178_c_7_81 | 104610 | 105950 | + | SBP_bac_8 |
| TC | Rep_2178_c_7 | Rep_2178_c_7_82 | 106072 | 107490 | + | 3.A.1.1.27 |
| TC | Rep_2178_c_7 | Rep_2178_c_7_83 | 107490 | 108335 | + | 3.A.1.1.27 |
Gene ID: Rep_2178_c_7_79
Type: CAZyme
Location: 101037 - 103052 (-)
Type: CAZyme
Location: 101037 - 103052 (-)
Gene ID: Rep_2178_c_7_80
Type: TF
Location: 103336 - 104337 (+)
Type: TF
Location: 103336 - 104337 (+)
Gene ID: Rep_2178_c_7_81
Type: pfam
Location: 104610 - 105950 (+)
Type: pfam
Location: 104610 - 105950 (+)
Gene ID: Rep_2178_c_7_82
Type: TC
Location: 106072 - 107490 (+)
Type: TC
Location: 106072 - 107490 (+)
Gene ID: Rep_2178_c_7_83
Type: TC
Location: 107490 - 108335 (+)
Type: TC
Location: 107490 - 108335 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2178_c_7_81 | vegan > omnivore | 2.74519 | 0.02909 |
| Rep_2178_c_7_81 | vegetarian > omnivore | 2.71385 | 0.00551 |
| Rep_2178_c_7_82 | vegan > omnivore | 1.30579 | 0.02909 |
| Rep_2178_c_7_82 | vegetarian > omnivore | 2.30158 | 0.00551 |
| Rep_2178_c_7_83 | vegetarian > omnivore | 1.45009 | 0.00551 |