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Cluster: Rep_2178_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2178_c_0 Rep_2178_c_0_113 129274 130584 + GH13_20
peptidase Rep_2178_c_0 Rep_2178_c_0_114 130680 132170 - S01.UPC
pfam Rep_2178_c_0 Rep_2178_c_0_115 132280 133644 - DUF6056
CAZyme Rep_2178_c_0 Rep_2178_c_0_116 133659 134639 - GT2
pfam Rep_2178_c_0 Rep_2178_c_0_117 134605 135723 - LytR_cpsA_psr
TC Rep_2178_c_0 Rep_2178_c_0_118 135736 137154 - 9.B.18.1.1
CAZyme Rep_2178_c_0 Rep_2178_c_0_119 137270 138220 - GT2
CAZyme Rep_2178_c_0 Rep_2178_c_0_120 138240 140105 - GT2
NULL(UNKNOWN) Rep_2178_c_0 Rep_2178_c_0_121 140102 140308 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2178_c_0 Rep_2178_c_0_122 140339 142774 - GT2
Gene ID: Rep_2178_c_0_113
Type: CAZyme
Location: 129274 - 130584 (+)
Gene ID: Rep_2178_c_0_114
Type: peptidase
Location: 130680 - 132170 (-)
Gene ID: Rep_2178_c_0_115
Type: pfam
Location: 132280 - 133644 (-)
Gene ID: Rep_2178_c_0_116
Type: CAZyme
Location: 133659 - 134639 (-)
Gene ID: Rep_2178_c_0_117
Type: pfam
Location: 134605 - 135723 (-)
Gene ID: Rep_2178_c_0_118
Type: TC
Location: 135736 - 137154 (-)
Gene ID: Rep_2178_c_0_119
Type: CAZyme
Location: 137270 - 138220 (-)
Gene ID: Rep_2178_c_0_120
Type: CAZyme
Location: 138240 - 140105 (-)
Gene ID: Rep_2178_c_0_121
Type:
Location: 140102 - 140308 (-)
Gene ID: Rep_2178_c_0_122
Type: CAZyme
Location: 140339 - 142774 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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