Cluster: Rep_2178_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2178
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2178_c_6 | Rep_2178_c_6_78 | 74017 | 76698 | - | 3.A.12.1.1 |
| pfam | Rep_2178_c_6 | Rep_2178_c_6_79 | 76728 | 77606 | - | BacA |
| peptidase | Rep_2178_c_6 | Rep_2178_c_6_80 | 77684 | 78367 | - | S14.UPW |
| CAZyme | Rep_2178_c_6 | Rep_2178_c_6_81 | 78481 | 79932 | - | GT5 |
| peptidase | Rep_2178_c_6 | Rep_2178_c_6_82 | 80057 | 80785 | - | M20.UNW |
| TC | Rep_2178_c_6 | Rep_2178_c_6_83 | 80846 | 82207 | - | 9.A.40.2.2 |
Gene ID: Rep_2178_c_6_78
Type: TC
Location: 74017 - 76698 (-)
Type: TC
Location: 74017 - 76698 (-)
Gene ID: Rep_2178_c_6_79
Type: pfam
Location: 76728 - 77606 (-)
Type: pfam
Location: 76728 - 77606 (-)
Gene ID: Rep_2178_c_6_80
Type: peptidase
Location: 77684 - 78367 (-)
Type: peptidase
Location: 77684 - 78367 (-)
Gene ID: Rep_2178_c_6_81
Type: CAZyme
Location: 78481 - 79932 (-)
Type: CAZyme
Location: 78481 - 79932 (-)
Gene ID: Rep_2178_c_6_82
Type: peptidase
Location: 80057 - 80785 (-)
Type: peptidase
Location: 80057 - 80785 (-)
Gene ID: Rep_2178_c_6_83
Type: TC
Location: 80846 - 82207 (-)
Type: TC
Location: 80846 - 82207 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.