Cluster: Rep_2178_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2178
- CGC Family ID: CGCFAM_01886
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2178_c_5 | Rep_2178_c_5_148 | 144728 | 145804 | - | GT28 |
| NULL(UNKNOWN) | Rep_2178_c_5 | Rep_2178_c_5_149 | 146035 | 146313 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2178_c_5 | Rep_2178_c_5_150 | 146512 | 147852 | + | SH3_4 | Hydrolase_2 | SH3_3 | SH3_3 |
| TC | Rep_2178_c_5 | Rep_2178_c_5_151 | 147964 | 148899 | + | 8.A.21.2.2 |
Gene ID: Rep_2178_c_5_148
Type: CAZyme
Location: 144728 - 145804 (-)
Type: CAZyme
Location: 144728 - 145804 (-)
Gene ID: Rep_2178_c_5_149
Type:
Location: 146035 - 146313 (+)
Type:
Location: 146035 - 146313 (+)
Gene ID: Rep_2178_c_5_150
Type: pfam
Location: 146512 - 147852 (+)
Type: pfam
Location: 146512 - 147852 (+)
Gene ID: Rep_2178_c_5_151
Type: TC
Location: 147964 - 148899 (+)
Type: TC
Location: 147964 - 148899 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.