Cluster: Rep_2178_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2178
- CGC Family ID: CGCFAM_00951
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2178_c_5 | Rep_2178_c_5_118 | 111633 | 113099 | + | 1.B.52.2.2 |
| TC | Rep_2178_c_5 | Rep_2178_c_5_119 | 113265 | 114587 | + | 2.A.86.1.8 |
| STP | Rep_2178_c_5 | Rep_2178_c_5_120 | 114690 | 117347 | + | TPR_2 |
| CAZyme | Rep_2178_c_5 | Rep_2178_c_5_121 | 117375 | 119273 | + | CBM48 | GH13_9 |
| pfam | Rep_2178_c_5 | Rep_2178_c_5_122 | 119434 | 122673 | + | DUF6240 | DUF6240 |
| pfam | Rep_2178_c_5 | Rep_2178_c_5_123 | 122710 | 123411 | - | Amidase_3 |
| CAZyme | Rep_2178_c_5 | Rep_2178_c_5_124 | 123486 | 125270 | - | GH18 |
Gene ID: Rep_2178_c_5_118
Type: TC
Location: 111633 - 113099 (+)
Type: TC
Location: 111633 - 113099 (+)
Gene ID: Rep_2178_c_5_119
Type: TC
Location: 113265 - 114587 (+)
Type: TC
Location: 113265 - 114587 (+)
Gene ID: Rep_2178_c_5_120
Type: STP
Location: 114690 - 117347 (+)
Type: STP
Location: 114690 - 117347 (+)
Gene ID: Rep_2178_c_5_121
Type: CAZyme
Location: 117375 - 119273 (+)
Type: CAZyme
Location: 117375 - 119273 (+)
Gene ID: Rep_2178_c_5_122
Type: pfam
Location: 119434 - 122673 (+)
Type: pfam
Location: 119434 - 122673 (+)
Gene ID: Rep_2178_c_5_123
Type: pfam
Location: 122710 - 123411 (-)
Type: pfam
Location: 122710 - 123411 (-)
Gene ID: Rep_2178_c_5_124
Type: CAZyme
Location: 123486 - 125270 (-)
Type: CAZyme
Location: 123486 - 125270 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.