Cluster: Rep_2178_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2178
- CGC Family ID: CGCFAM_00003
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2178_c_4 | Rep_2178_c_4_74 | 79474 | 79737 | + | 8.A.8.1.6 |
| pfam | Rep_2178_c_4 | Rep_2178_c_4_75 | 79765 | 80640 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | Rep_2178_c_4 | Rep_2178_c_4_76 | 80659 | 82260 | + | Glucos_trans_II |
| CAZyme | Rep_2178_c_4 | Rep_2178_c_4_77 | 82264 | 83238 | + | GT2 |
Gene ID: Rep_2178_c_4_74
Type: TC
Location: 79474 - 79737 (+)
Type: TC
Location: 79474 - 79737 (+)
Gene ID: Rep_2178_c_4_75
Type: pfam
Location: 79765 - 80640 (+)
Type: pfam
Location: 79765 - 80640 (+)
Gene ID: Rep_2178_c_4_76
Type: pfam
Location: 80659 - 82260 (+)
Type: pfam
Location: 80659 - 82260 (+)
Gene ID: Rep_2178_c_4_77
Type: CAZyme
Location: 82264 - 83238 (+)
Type: CAZyme
Location: 82264 - 83238 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.