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Cluster: Rep_2178_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2178_c_4 Rep_2178_c_4_37 34124 35008 + 2.A.115.1.1
TF Rep_2178_c_4 Rep_2178_c_4_38 35021 35926 + HTH_1
NULL(UNKNOWN) Rep_2178_c_4 Rep_2178_c_4_39 36054 36170 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2178_c_4 Rep_2178_c_4_40 36210 37307 + 3.A.1.24.2
TC Rep_2178_c_4 Rep_2178_c_4_41 37297 37956 + 3.A.1.24.5
TC Rep_2178_c_4 Rep_2178_c_4_42 38059 38997 + 3.A.1.24.5
peptidase Rep_2178_c_4 Rep_2178_c_4_43 39140 40318 + S09.UPW
pfam Rep_2178_c_4 Rep_2178_c_4_44 40378 41037 + CxxCxxCC
CAZyme Rep_2178_c_4 Rep_2178_c_4_45 41086 41889 + CBM50
Gene ID: Rep_2178_c_4_37
Type: TC
Location: 34124 - 35008 (+)
Gene ID: Rep_2178_c_4_38
Type: TF
Location: 35021 - 35926 (+)
Gene ID: Rep_2178_c_4_39
Type:
Location: 36054 - 36170 (+)
Gene ID: Rep_2178_c_4_40
Type: TC
Location: 36210 - 37307 (+)
Gene ID: Rep_2178_c_4_41
Type: TC
Location: 37297 - 37956 (+)
Gene ID: Rep_2178_c_4_42
Type: TC
Location: 38059 - 38997 (+)
Gene ID: Rep_2178_c_4_43
Type: peptidase
Location: 39140 - 40318 (+)
Gene ID: Rep_2178_c_4_44
Type: pfam
Location: 40378 - 41037 (+)
Gene ID: Rep_2178_c_4_45
Type: CAZyme
Location: 41086 - 41889 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2178_c_4_38 vegan > omnivore 1.29346 0.02909
Rep_2178_c_4_38 vegetarian > omnivore 1.08158 0.00551
Rep_2178_c_4_39 vegan > omnivore 2.37898 0.02909
Rep_2178_c_4_39 vegetarian > omnivore 1.65181 0.00551
Rep_2178_c_4_41 vegetarian > omnivore 1.25038 0.00551
Rep_2178_c_4_41 vegan > omnivore 1.08493 0.02909
Rep_2178_c_4_43 vegetarian > omnivore 2.55184 0.00551
Rep_2178_c_4_43 vegan > omnivore 1.95243 0.02466

🧭 Explore Read Mapping of CGC

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