Cluster: Rep_2178_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_2178
- CGC Family ID: CGCFAM_00193
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2178_c_0 | Rep_2178_c_0_47 | 55943 | 58258 | - | GH1 |
| CAZyme | Rep_2178_c_0 | Rep_2178_c_0_48 | 58328 | 59443 | - | CBM35inCE17 | CE17 |
| CAZyme | Rep_2178_c_0 | Rep_2178_c_0_49 | 59447 | 60505 | - | CE2 |
| CAZyme | Rep_2178_c_0 | Rep_2178_c_0_50 | 60514 | 61536 | - | GH130_2 |
| CAZyme | Rep_2178_c_0 | Rep_2178_c_0_51 | 61536 | 62714 | - | GH130_1 |
| pfam | Rep_2178_c_0 | Rep_2178_c_0_52 | 62733 | 63977 | - | GlcNAc_2-epim |
| TC | Rep_2178_c_0 | Rep_2178_c_0_53 | 63996 | 64871 | - | 3.A.1.1.18 |
| TC | Rep_2178_c_0 | Rep_2178_c_0_54 | 64886 | 65863 | - | 3.A.1.1.46 |
| pfam | Rep_2178_c_0 | Rep_2178_c_0_55 | 66213 | 66845 | - | Hexapep | Mac | Hexapep_2 |
| pfam | Rep_2178_c_0 | Rep_2178_c_0_56 | 66847 | 67800 | - | cobW | CobW_C |
| TC | Rep_2178_c_0 | Rep_2178_c_0_57 | 67973 | 69424 | - | 3.A.1.1.44 |
| TF | Rep_2178_c_0 | Rep_2178_c_0_58 | 69770 | 70651 | + | HTH_AraC |
| TF | Rep_2178_c_0 | Rep_2178_c_0_59 | 70720 | 71739 | - | LacI |
| CAZyme | Rep_2178_c_0 | Rep_2178_c_0_60 | 71762 | 73954 | - | GH36 |
Gene ID: Rep_2178_c_0_47
Type: CAZyme
Location: 55943 - 58258 (-)
Type: CAZyme
Location: 55943 - 58258 (-)
Gene ID: Rep_2178_c_0_48
Type: CAZyme
Location: 58328 - 59443 (-)
Type: CAZyme
Location: 58328 - 59443 (-)
Gene ID: Rep_2178_c_0_49
Type: CAZyme
Location: 59447 - 60505 (-)
Type: CAZyme
Location: 59447 - 60505 (-)
Gene ID: Rep_2178_c_0_50
Type: CAZyme
Location: 60514 - 61536 (-)
Type: CAZyme
Location: 60514 - 61536 (-)
Gene ID: Rep_2178_c_0_51
Type: CAZyme
Location: 61536 - 62714 (-)
Type: CAZyme
Location: 61536 - 62714 (-)
Gene ID: Rep_2178_c_0_52
Type: pfam
Location: 62733 - 63977 (-)
Type: pfam
Location: 62733 - 63977 (-)
Gene ID: Rep_2178_c_0_53
Type: TC
Location: 63996 - 64871 (-)
Type: TC
Location: 63996 - 64871 (-)
Gene ID: Rep_2178_c_0_54
Type: TC
Location: 64886 - 65863 (-)
Type: TC
Location: 64886 - 65863 (-)
Gene ID: Rep_2178_c_0_55
Type: pfam
Location: 66213 - 66845 (-)
Type: pfam
Location: 66213 - 66845 (-)
Gene ID: Rep_2178_c_0_56
Type: pfam
Location: 66847 - 67800 (-)
Type: pfam
Location: 66847 - 67800 (-)
Gene ID: Rep_2178_c_0_57
Type: TC
Location: 67973 - 69424 (-)
Type: TC
Location: 67973 - 69424 (-)
Gene ID: Rep_2178_c_0_58
Type: TF
Location: 69770 - 70651 (+)
Type: TF
Location: 69770 - 70651 (+)
Gene ID: Rep_2178_c_0_59
Type: TF
Location: 70720 - 71739 (-)
Type: TF
Location: 70720 - 71739 (-)
Gene ID: Rep_2178_c_0_60
Type: CAZyme
Location: 71762 - 73954 (-)
Type: CAZyme
Location: 71762 - 73954 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900550935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.