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Cluster: Rep_2126_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2126_c_11 Rep_2126_c_11_3 541 2313 + 8.A.59.2.1
TF Rep_2126_c_11 Rep_2126_c_11_4 2306 3856 + HTH_AraC | HTH_AraC
STP Rep_2126_c_11 Rep_2126_c_11_5 3938 5176 + SBP_bac_1
TC Rep_2126_c_11 Rep_2126_c_11_6 5237 6118 + 3.A.1.1.7
TC Rep_2126_c_11 Rep_2126_c_11_7 6124 6948 + 3.A.1.1.45
NULL(UNKNOWN) Rep_2126_c_11 Rep_2126_c_11_8 6975 8567 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_2126_c_11 Rep_2126_c_11_9 8827 10965 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2126_c_11 Rep_2126_c_11_10 10981 12888 + CBM91 | GH43_11
TC Rep_2126_c_11 Rep_2126_c_11_11 13069 14367 + 3.A.1.1.24
TC Rep_2126_c_11 Rep_2126_c_11_12 14456 15343 + 3.A.1.1.28
TC Rep_2126_c_11 Rep_2126_c_11_13 15343 16182 + 3.A.1.1.45
TC Rep_2126_c_11 Rep_2126_c_11_14 16244 18088 + 8.A.59.2.1
TF Rep_2126_c_11 Rep_2126_c_11_15 18066 19511 + HTH_AraC | HTH_AraC
CAZyme Rep_2126_c_11 Rep_2126_c_11_16 19554 20708 + GH88
Gene ID: Rep_2126_c_11_3
Type: TC
Location: 541 - 2313 (+)
Gene ID: Rep_2126_c_11_4
Type: TF
Location: 2306 - 3856 (+)
Gene ID: Rep_2126_c_11_5
Type: STP
Location: 3938 - 5176 (+)
Gene ID: Rep_2126_c_11_6
Type: TC
Location: 5237 - 6118 (+)
Gene ID: Rep_2126_c_11_7
Type: TC
Location: 6124 - 6948 (+)
Gene ID: Rep_2126_c_11_8
Type:
Location: 6975 - 8567 (+)
Gene ID: Rep_2126_c_11_9
Type:
Location: 8827 - 10965 (+)
Gene ID: Rep_2126_c_11_10
Type: CAZyme
Location: 10981 - 12888 (+)
Gene ID: Rep_2126_c_11_11
Type: TC
Location: 13069 - 14367 (+)
Gene ID: Rep_2126_c_11_12
Type: TC
Location: 14456 - 15343 (+)
Gene ID: Rep_2126_c_11_13
Type: TC
Location: 15343 - 16182 (+)
Gene ID: Rep_2126_c_11_14
Type: TC
Location: 16244 - 18088 (+)
Gene ID: Rep_2126_c_11_15
Type: TF
Location: 18066 - 19511 (+)
Gene ID: Rep_2126_c_11_16
Type: CAZyme
Location: 19554 - 20708 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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