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Cluster: Rep_2080_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2080_c_2 Rep_2080_c_2_23 25914 26462 - 3.A.1.1.9
TC Rep_2080_c_2 Rep_2080_c_2_24 26519 26824 - 3.A.1.1.10
TC Rep_2080_c_2 Rep_2080_c_2_25 26841 27608 - 3.A.1.1.10
TF Rep_2080_c_2 Rep_2080_c_2_26 28112 29296 - HTH_AraC
STP Rep_2080_c_2 Rep_2080_c_2_27 29263 30219 - dCache_1
TC Rep_2080_c_2 Rep_2080_c_2_28 30267 31175 - 3.A.1.1.29
TC Rep_2080_c_2 Rep_2080_c_2_29 31190 31468 - 3.A.1.1.9
TC Rep_2080_c_2 Rep_2080_c_2_30 31530 32141 - 3.A.1.1.10
TC Rep_2080_c_2 Rep_2080_c_2_31 32170 33822 - 3.A.1.1.9
sulfatase Rep_2080_c_2 Rep_2080_c_2_32 34122 35474 + S1_83
pfam Rep_2080_c_2 Rep_2080_c_2_33 35519 35860 + Hepar_II_III_N
CAZyme Rep_2080_c_2 Rep_2080_c_2_34 35802 37550 + PL12
Gene ID: Rep_2080_c_2_23
Type: TC
Location: 25914 - 26462 (-)
Gene ID: Rep_2080_c_2_24
Type: TC
Location: 26519 - 26824 (-)
Gene ID: Rep_2080_c_2_25
Type: TC
Location: 26841 - 27608 (-)
Gene ID: Rep_2080_c_2_26
Type: TF
Location: 28112 - 29296 (-)
Gene ID: Rep_2080_c_2_27
Type: STP
Location: 29263 - 30219 (-)
Gene ID: Rep_2080_c_2_28
Type: TC
Location: 30267 - 31175 (-)
Gene ID: Rep_2080_c_2_29
Type: TC
Location: 31190 - 31468 (-)
Gene ID: Rep_2080_c_2_30
Type: TC
Location: 31530 - 32141 (-)
Gene ID: Rep_2080_c_2_31
Type: TC
Location: 32170 - 33822 (-)
Gene ID: Rep_2080_c_2_32
Type: sulfatase
Location: 34122 - 35474 (+)
Gene ID: Rep_2080_c_2_33
Type: pfam
Location: 35519 - 35860 (+)
Gene ID: Rep_2080_c_2_34
Type: CAZyme
Location: 35802 - 37550 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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