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Cluster: Rep_2080_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2080_c_1 Rep_2080_c_1_184 161107 162273 + 2.A.1.60.3
TC Rep_2080_c_1 Rep_2080_c_1_185 162582 164273 + 3.A.18.1.1
CAZyme Rep_2080_c_1 Rep_2080_c_1_186 164296 165435 + CE9
CAZyme Rep_2080_c_1 Rep_2080_c_1_187 165516 166919 - GH4
TF Rep_2080_c_1 Rep_2080_c_1_188 167164 168144 + HTH_AraC | HTH_AraC
TF Rep_2080_c_1 Rep_2080_c_1_189 168095 168982 - HTH_AraC | HTH_AraC
CAZyme Rep_2080_c_1 Rep_2080_c_1_190 169096 170274 + GH177
pfam Rep_2080_c_1 Rep_2080_c_1_191 170309 171160 + AP_endonuc_2
CAZyme Rep_2080_c_1 Rep_2080_c_1_192 171231 172343 - GH105
TF Rep_2080_c_1 Rep_2080_c_1_193 172345 173871 - HTH_AraC
TC Rep_2080_c_1 Rep_2080_c_1_194 173902 175689 - 8.A.59.2.1
STP Rep_2080_c_1 Rep_2080_c_1_195 175918 177282 + SBP_bac_1
STP Rep_2080_c_1 Rep_2080_c_1_196 177575 178945 + SBP_bac_1
TC Rep_2080_c_1 Rep_2080_c_1_197 179017 179928 + 3.A.1.1.11
TC Rep_2080_c_1 Rep_2080_c_1_198 179932 180777 + 3.A.1.1.11
pfam Rep_2080_c_1 Rep_2080_c_1_199 180863 182578 + ILVD_EDD_N | ILV_EDD_C
pfam Rep_2080_c_1 Rep_2080_c_1_200 182658 183566 + DHDPS
CAZyme Rep_2080_c_1 Rep_2080_c_1_201 183629 185287 + CBM91 | GH43_11
TF Rep_2080_c_1 Rep_2080_c_1_202 185601 186353 + HTH_DeoR
STP Rep_2080_c_1 Rep_2080_c_1_203 186350 187267 + PfkB
TC Rep_2080_c_1 Rep_2080_c_1_204 187264 189252 + 4.A.2.1.4
Gene ID: Rep_2080_c_1_184
Type: TC
Location: 161107 - 162273 (+)
Gene ID: Rep_2080_c_1_185
Type: TC
Location: 162582 - 164273 (+)
Gene ID: Rep_2080_c_1_186
Type: CAZyme
Location: 164296 - 165435 (+)
Gene ID: Rep_2080_c_1_187
Type: CAZyme
Location: 165516 - 166919 (-)
Gene ID: Rep_2080_c_1_188
Type: TF
Location: 167164 - 168144 (+)
Gene ID: Rep_2080_c_1_189
Type: TF
Location: 168095 - 168982 (-)
Gene ID: Rep_2080_c_1_190
Type: CAZyme
Location: 169096 - 170274 (+)
Gene ID: Rep_2080_c_1_191
Type: pfam
Location: 170309 - 171160 (+)
Gene ID: Rep_2080_c_1_192
Type: CAZyme
Location: 171231 - 172343 (-)
Gene ID: Rep_2080_c_1_193
Type: TF
Location: 172345 - 173871 (-)
Gene ID: Rep_2080_c_1_194
Type: TC
Location: 173902 - 175689 (-)
Gene ID: Rep_2080_c_1_195
Type: STP
Location: 175918 - 177282 (+)
Gene ID: Rep_2080_c_1_196
Type: STP
Location: 177575 - 178945 (+)
Gene ID: Rep_2080_c_1_197
Type: TC
Location: 179017 - 179928 (+)
Gene ID: Rep_2080_c_1_198
Type: TC
Location: 179932 - 180777 (+)
Gene ID: Rep_2080_c_1_199
Type: pfam
Location: 180863 - 182578 (+)
Gene ID: Rep_2080_c_1_200
Type: pfam
Location: 182658 - 183566 (+)
Gene ID: Rep_2080_c_1_201
Type: CAZyme
Location: 183629 - 185287 (+)
Gene ID: Rep_2080_c_1_202
Type: TF
Location: 185601 - 186353 (+)
Gene ID: Rep_2080_c_1_203
Type: STP
Location: 186350 - 187267 (+)
Gene ID: Rep_2080_c_1_204
Type: TC
Location: 187264 - 189252 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2080_c_1_202 vegan > omnivore 1.82000 0.01315

🧭 Explore Read Mapping of CGC

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