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Cluster: Rep_2080_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2080_c_27 Rep_2080_c_27_702 569975 570460 + GH28
TC Rep_2080_c_27 Rep_2080_c_27_703 570709 571893 + 3.A.1.20.3
TC Rep_2080_c_27 Rep_2080_c_27_704 571941 573089 + 3.A.1.20.3
pfam Rep_2080_c_27 Rep_2080_c_27_705 573234 573746 + BPD_transp_1
TC Rep_2080_c_27 Rep_2080_c_27_706 573779 574081 + 3.A.1.1.10
TC Rep_2080_c_27 Rep_2080_c_27_707 574059 574856 + 3.A.1.20.2
NULL(UNKNOWN) Rep_2080_c_27 Rep_2080_c_27_708 574928 575050 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2080_c_27 Rep_2080_c_27_709 575438 575908 + 3.A.1.20.1
Gene ID: Rep_2080_c_27_702
Type: CAZyme
Location: 569975 - 570460 (+)
Gene ID: Rep_2080_c_27_703
Type: TC
Location: 570709 - 571893 (+)
Gene ID: Rep_2080_c_27_704
Type: TC
Location: 571941 - 573089 (+)
Gene ID: Rep_2080_c_27_705
Type: pfam
Location: 573234 - 573746 (+)
Gene ID: Rep_2080_c_27_706
Type: TC
Location: 573779 - 574081 (+)
Gene ID: Rep_2080_c_27_707
Type: TC
Location: 574059 - 574856 (+)
Gene ID: Rep_2080_c_27_708
Type:
Location: 574928 - 575050 (+)
Gene ID: Rep_2080_c_27_709
Type: TC
Location: 575438 - 575908 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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