Cluster: Rep_2080_CGC40
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2080
- CGC Family ID: CGCFAM_08672
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2080_c_26 | Rep_2080_c_26_268 | 261664 | 263340 | + | 2.A.58.2.2 |
| NULL(UNKNOWN) | Rep_2080_c_26 | Rep_2080_c_26_269 | 263513 | 263758 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2080_c_26 | Rep_2080_c_26_270 | 263755 | 264267 | - | Lipase_GDSL | Lipase_GDSL_2 |
| TC | Rep_2080_c_26 | Rep_2080_c_26_271 | 264615 | 265508 | + | 3.A.1.1.10 |
| TC | Rep_2080_c_26 | Rep_2080_c_26_272 | 265677 | 266396 | + | 3.A.1.1.10 |
| STP | Rep_2080_c_26 | Rep_2080_c_26_273 | 266472 | 268007 | + | SBP_bac_1 |
| TC | Rep_2080_c_26 | Rep_2080_c_26_274 | 268141 | 269835 | + | 8.A.59.2.1 |
| TF | Rep_2080_c_26 | Rep_2080_c_26_275 | 269823 | 270596 | + | HTH_AraC |
| NULL(UNKNOWN) | Rep_2080_c_26 | Rep_2080_c_26_276 | 270593 | 271297 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2080_c_26 | Rep_2080_c_26_277 | 271294 | 272649 | + | PL11 |
| CAZyme | Rep_2080_c_26 | Rep_2080_c_26_278 | 272705 | 273811 | + | GH3 |
| sulfatase | Rep_2080_c_26 | Rep_2080_c_26_279 | 273808 | 274818 | + | S1_7 |
| CAZyme | Rep_2080_c_26 | Rep_2080_c_26_280 | 274844 | 276256 | + | GH4 |
| TC | Rep_2080_c_26 | Rep_2080_c_26_281 | 276338 | 278062 | + | 3.A.1.106.2 |
Gene ID: Rep_2080_c_26_268
Type: TC
Location: 261664 - 263340 (+)
Type: TC
Location: 261664 - 263340 (+)
Gene ID: Rep_2080_c_26_269
Type:
Location: 263513 - 263758 (-)
Type:
Location: 263513 - 263758 (-)
Gene ID: Rep_2080_c_26_270
Type: pfam
Location: 263755 - 264267 (-)
Type: pfam
Location: 263755 - 264267 (-)
Gene ID: Rep_2080_c_26_271
Type: TC
Location: 264615 - 265508 (+)
Type: TC
Location: 264615 - 265508 (+)
Gene ID: Rep_2080_c_26_272
Type: TC
Location: 265677 - 266396 (+)
Type: TC
Location: 265677 - 266396 (+)
Gene ID: Rep_2080_c_26_273
Type: STP
Location: 266472 - 268007 (+)
Type: STP
Location: 266472 - 268007 (+)
Gene ID: Rep_2080_c_26_274
Type: TC
Location: 268141 - 269835 (+)
Type: TC
Location: 268141 - 269835 (+)
Gene ID: Rep_2080_c_26_275
Type: TF
Location: 269823 - 270596 (+)
Type: TF
Location: 269823 - 270596 (+)
Gene ID: Rep_2080_c_26_276
Type:
Location: 270593 - 271297 (+)
Type:
Location: 270593 - 271297 (+)
Gene ID: Rep_2080_c_26_277
Type: CAZyme
Location: 271294 - 272649 (+)
Type: CAZyme
Location: 271294 - 272649 (+)
Gene ID: Rep_2080_c_26_278
Type: CAZyme
Location: 272705 - 273811 (+)
Type: CAZyme
Location: 272705 - 273811 (+)
Gene ID: Rep_2080_c_26_279
Type: sulfatase
Location: 273808 - 274818 (+)
Type: sulfatase
Location: 273808 - 274818 (+)
Gene ID: Rep_2080_c_26_280
Type: CAZyme
Location: 274844 - 276256 (+)
Type: CAZyme
Location: 274844 - 276256 (+)
Gene ID: Rep_2080_c_26_281
Type: TC
Location: 276338 - 278062 (+)
Type: TC
Location: 276338 - 278062 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp003478355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.