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Cluster: Rep_2080_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2080_c_1 Rep_2080_c_1_146 123484 124203 + 3.A.2.1.5
TC Rep_2080_c_1 Rep_2080_c_1_147 124237 124494 + 3.A.2.1.5
pfam Rep_2080_c_1 Rep_2080_c_1_148 124533 125054 + ATP-synt_B | Mt_ATP-synt_B
TC Rep_2080_c_1 Rep_2080_c_1_149 125042 125590 + 3.A.2.1.6
TC Rep_2080_c_1 Rep_2080_c_1_150 125624 127126 + 3.A.2.1.5
TC Rep_2080_c_1 Rep_2080_c_1_151 127147 128004 + 3.A.2.1.5
TC Rep_2080_c_1 Rep_2080_c_1_152 128122 129513 + 3.A.2.1.5
TC Rep_2080_c_1 Rep_2080_c_1_153 129525 129926 + 3.A.2.1.1
pfam Rep_2080_c_1 Rep_2080_c_1_154 130145 131032 + HAMP
TC Rep_2080_c_1 Rep_2080_c_1_155 131074 131634 + 8.A.59.2.1
TF Rep_2080_c_1 Rep_2080_c_1_156 131681 132496 + HTH_AraC | HTH_AraC
TC Rep_2080_c_1 Rep_2080_c_1_157 132517 133530 + 2.A.56.1.5
NULL(UNKNOWN) Rep_2080_c_1 Rep_2080_c_1_158 133588 134865 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase Rep_2080_c_1 Rep_2080_c_1_159 134948 135715 - S09.UPW
TC Rep_2080_c_1 Rep_2080_c_1_160 135776 137065 - 2.A.56.1.5
pfam Rep_2080_c_1 Rep_2080_c_1_161 137065 137586 - DctQ
TC Rep_2080_c_1 Rep_2080_c_1_162 137657 138787 - 2.A.56.1.1
CAZyme Rep_2080_c_1 Rep_2080_c_1_163 139107 140915 + CBM48 | GH13_9
Gene ID: Rep_2080_c_1_146
Type: TC
Location: 123484 - 124203 (+)
Gene ID: Rep_2080_c_1_147
Type: TC
Location: 124237 - 124494 (+)
Gene ID: Rep_2080_c_1_148
Type: pfam
Location: 124533 - 125054 (+)
Gene ID: Rep_2080_c_1_149
Type: TC
Location: 125042 - 125590 (+)
Gene ID: Rep_2080_c_1_150
Type: TC
Location: 125624 - 127126 (+)
Gene ID: Rep_2080_c_1_151
Type: TC
Location: 127147 - 128004 (+)
Gene ID: Rep_2080_c_1_152
Type: TC
Location: 128122 - 129513 (+)
Gene ID: Rep_2080_c_1_153
Type: TC
Location: 129525 - 129926 (+)
Gene ID: Rep_2080_c_1_154
Type: pfam
Location: 130145 - 131032 (+)
Gene ID: Rep_2080_c_1_155
Type: TC
Location: 131074 - 131634 (+)
Gene ID: Rep_2080_c_1_156
Type: TF
Location: 131681 - 132496 (+)
Gene ID: Rep_2080_c_1_157
Type: TC
Location: 132517 - 133530 (+)
Gene ID: Rep_2080_c_1_158
Type:
Location: 133588 - 134865 (-)
Gene ID: Rep_2080_c_1_159
Type: peptidase
Location: 134948 - 135715 (-)
Gene ID: Rep_2080_c_1_160
Type: TC
Location: 135776 - 137065 (-)
Gene ID: Rep_2080_c_1_161
Type: pfam
Location: 137065 - 137586 (-)
Gene ID: Rep_2080_c_1_162
Type: TC
Location: 137657 - 138787 (-)
Gene ID: Rep_2080_c_1_163
Type: CAZyme
Location: 139107 - 140915 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2080_c_1_153 vegetarian > vegan 1.33437 0.04979

🧭 Explore Read Mapping of CGC

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