dbCAN Logo

Cluster: Rep_2080_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2080_c_26 Rep_2080_c_26_191 180266 182236 - 8.A.59.2.1
STP Rep_2080_c_26 Rep_2080_c_26_192 182468 183742 + SBP_bac_1
STP Rep_2080_c_26 Rep_2080_c_26_193 183753 184481 + AraC_binding
TC Rep_2080_c_26 Rep_2080_c_26_194 184518 185888 + 3.A.1.1.11
CAZyme Rep_2080_c_26 Rep_2080_c_26_195 185981 187111 + GH105
TC Rep_2080_c_26 Rep_2080_c_26_196 187132 187563 + 3.A.1.1.11
TC Rep_2080_c_26 Rep_2080_c_26_197 187682 188059 + 3.A.1.1.11
TC Rep_2080_c_26 Rep_2080_c_26_198 188065 188913 + 3.A.1.1.11
CAZyme Rep_2080_c_26 Rep_2080_c_26_199 188928 190514 + GH28
pfam Rep_2080_c_26 Rep_2080_c_26_200 190516 191328 + AP_endonuc_2
TC Rep_2080_c_26 Rep_2080_c_26_201 191335 192663 + 2.A.66.1.23
Gene ID: Rep_2080_c_26_191
Type: TC
Location: 180266 - 182236 (-)
Gene ID: Rep_2080_c_26_192
Type: STP
Location: 182468 - 183742 (+)
Gene ID: Rep_2080_c_26_193
Type: STP
Location: 183753 - 184481 (+)
Gene ID: Rep_2080_c_26_194
Type: TC
Location: 184518 - 185888 (+)
Gene ID: Rep_2080_c_26_195
Type: CAZyme
Location: 185981 - 187111 (+)
Gene ID: Rep_2080_c_26_196
Type: TC
Location: 187132 - 187563 (+)
Gene ID: Rep_2080_c_26_197
Type: TC
Location: 187682 - 188059 (+)
Gene ID: Rep_2080_c_26_198
Type: TC
Location: 188065 - 188913 (+)
Gene ID: Rep_2080_c_26_199
Type: CAZyme
Location: 188928 - 190514 (+)
Gene ID: Rep_2080_c_26_200
Type: pfam
Location: 190516 - 191328 (+)
Gene ID: Rep_2080_c_26_201
Type: TC
Location: 191335 - 192663 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List