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Cluster: Rep_2080_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2080_c_24 Rep_2080_c_24_536 508170 509093 - 3.A.1.2.18
TC Rep_2080_c_24 Rep_2080_c_24_537 509099 510193 - 3.A.1.2.10
TC Rep_2080_c_24 Rep_2080_c_24_538 510190 510459 - 3.A.1.2.12
TC Rep_2080_c_24 Rep_2080_c_24_539 510506 511453 - 3.A.1.2.12
TC Rep_2080_c_24 Rep_2080_c_24_540 511497 511727 - 3.A.1.2.19
pfam Rep_2080_c_24 Rep_2080_c_24_541 511887 512987 - Amino_oxidase | GLF | NAD_binding_8
CAZyme Rep_2080_c_24 Rep_2080_c_24_542 512984 514966 - GH13_11
pfam Rep_2080_c_24 Rep_2080_c_24_543 515023 515217 - ABC_tran_CTD
TC Rep_2080_c_24 Rep_2080_c_24_544 515214 515897 - 3.A.1.120.6
TC Rep_2080_c_24 Rep_2080_c_24_545 515897 517180 - 3.A.1.120.6
Gene ID: Rep_2080_c_24_536
Type: TC
Location: 508170 - 509093 (-)
Gene ID: Rep_2080_c_24_537
Type: TC
Location: 509099 - 510193 (-)
Gene ID: Rep_2080_c_24_538
Type: TC
Location: 510190 - 510459 (-)
Gene ID: Rep_2080_c_24_539
Type: TC
Location: 510506 - 511453 (-)
Gene ID: Rep_2080_c_24_540
Type: TC
Location: 511497 - 511727 (-)
Gene ID: Rep_2080_c_24_541
Type: pfam
Location: 511887 - 512987 (-)
Gene ID: Rep_2080_c_24_542
Type: CAZyme
Location: 512984 - 514966 (-)
Gene ID: Rep_2080_c_24_543
Type: pfam
Location: 515023 - 515217 (-)
Gene ID: Rep_2080_c_24_544
Type: TC
Location: 515214 - 515897 (-)
Gene ID: Rep_2080_c_24_545
Type: TC
Location: 515897 - 517180 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2080_c_24_536 vegetarian > vegan 1.60524 0.03641

🧭 Explore Read Mapping of CGC

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