Cluster: Rep_2080_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2080
- CGC Family ID: CGCFAM_00157
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2080_c_22 | Rep_2080_c_22_38 | 35335 | 35805 | + | 1.A.22.1.1 |
| TC | Rep_2080_c_22 | Rep_2080_c_22_39 | 35935 | 37236 | - | 2.A.56.1.5 |
| pfam | Rep_2080_c_22 | Rep_2080_c_22_40 | 37233 | 37736 | - | DctQ |
| TC | Rep_2080_c_22 | Rep_2080_c_22_41 | 37748 | 38770 | - | 2.A.56.1.3 |
| NULL(UNKNOWN) | Rep_2080_c_22 | Rep_2080_c_22_42 | 38793 | 39002 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2080_c_22 | Rep_2080_c_22_43 | 38959 | 39549 | - | DUF5110 | Glyco_hydro_31_3rd |
| CAZyme | Rep_2080_c_22 | Rep_2080_c_22_44 | 39733 | 40527 | - | GH31_2 |
Gene ID: Rep_2080_c_22_38
Type: TC
Location: 35335 - 35805 (+)
Type: TC
Location: 35335 - 35805 (+)
Gene ID: Rep_2080_c_22_39
Type: TC
Location: 35935 - 37236 (-)
Type: TC
Location: 35935 - 37236 (-)
Gene ID: Rep_2080_c_22_40
Type: pfam
Location: 37233 - 37736 (-)
Type: pfam
Location: 37233 - 37736 (-)
Gene ID: Rep_2080_c_22_41
Type: TC
Location: 37748 - 38770 (-)
Type: TC
Location: 37748 - 38770 (-)
Gene ID: Rep_2080_c_22_42
Type:
Location: 38793 - 39002 (-)
Type:
Location: 38793 - 39002 (-)
Gene ID: Rep_2080_c_22_43
Type: pfam
Location: 38959 - 39549 (-)
Type: pfam
Location: 38959 - 39549 (-)
Gene ID: Rep_2080_c_22_44
Type: CAZyme
Location: 39733 - 40527 (-)
Type: CAZyme
Location: 39733 - 40527 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp003478355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.