Cluster: Rep_2080_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2080
- CGC Family ID: CGCFAM_00142
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2080_c_18 | Rep_2080_c_18_14 | 10359 | 11267 | - | 3.A.1.1.10 |
| TC | Rep_2080_c_18 | Rep_2080_c_18_15 | 11278 | 11589 | - | 3.A.1.1.10 |
| NULL(UNKNOWN) | Rep_2080_c_18 | Rep_2080_c_18_16 | 12016 | 12234 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2080_c_18 | Rep_2080_c_18_17 | 12500 | 12733 | - | GFO_IDH_MocA_C3 |
| CAZyme | Rep_2080_c_18 | Rep_2080_c_18_18 | 12730 | 13266 | - | GH179 |
Gene ID: Rep_2080_c_18_14
Type: TC
Location: 10359 - 11267 (-)
Type: TC
Location: 10359 - 11267 (-)
Gene ID: Rep_2080_c_18_15
Type: TC
Location: 11278 - 11589 (-)
Type: TC
Location: 11278 - 11589 (-)
Gene ID: Rep_2080_c_18_16
Type:
Location: 12016 - 12234 (-)
Type:
Location: 12016 - 12234 (-)
Gene ID: Rep_2080_c_18_17
Type: pfam
Location: 12500 - 12733 (-)
Type: pfam
Location: 12500 - 12733 (-)
Gene ID: Rep_2080_c_18_18
Type: CAZyme
Location: 12730 - 13266 (-)
Type: CAZyme
Location: 12730 - 13266 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp003478355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.