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Cluster: Rep_2080_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2080_c_3 Rep_2080_c_3_304 267579 268913 + 2.A.66.1.4
CAZyme Rep_2080_c_3 Rep_2080_c_3_305 269051 269989 + GH25
pfam Rep_2080_c_3 Rep_2080_c_3_306 270017 270376 + DUF1622
TF Rep_2080_c_3 Rep_2080_c_3_307 270496 271365 - HTH_AraC | HTH_AraC
CAZyme Rep_2080_c_3 Rep_2080_c_3_308 271587 273476 + GH154
CAZyme Rep_2080_c_3 Rep_2080_c_3_309 273490 274629 + GH88
STP Rep_2080_c_3 Rep_2080_c_3_310 274675 276015 + SBP_bac_1
TC Rep_2080_c_3 Rep_2080_c_3_311 276134 277054 + 3.A.1.1.11
TC Rep_2080_c_3 Rep_2080_c_3_312 277073 277906 + 3.A.1.1.34
CAZyme Rep_2080_c_3 Rep_2080_c_3_313 277926 279515 + GH2
Gene ID: Rep_2080_c_3_304
Type: TC
Location: 267579 - 268913 (+)
Gene ID: Rep_2080_c_3_305
Type: CAZyme
Location: 269051 - 269989 (+)
Gene ID: Rep_2080_c_3_306
Type: pfam
Location: 270017 - 270376 (+)
Gene ID: Rep_2080_c_3_307
Type: TF
Location: 270496 - 271365 (-)
Gene ID: Rep_2080_c_3_308
Type: CAZyme
Location: 271587 - 273476 (+)
Gene ID: Rep_2080_c_3_309
Type: CAZyme
Location: 273490 - 274629 (+)
Gene ID: Rep_2080_c_3_310
Type: STP
Location: 274675 - 276015 (+)
Gene ID: Rep_2080_c_3_311
Type: TC
Location: 276134 - 277054 (+)
Gene ID: Rep_2080_c_3_312
Type: TC
Location: 277073 - 277906 (+)
Gene ID: Rep_2080_c_3_313
Type: CAZyme
Location: 277926 - 279515 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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