Cluster: Rep_2080_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2080
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2080_c_0 | Rep_2080_c_0_173 | 147528 | 148157 | + | 9.B.104.1.3 |
| pfam | Rep_2080_c_0 | Rep_2080_c_0_174 | 148159 | 148575 | + | HIT | DcpS_C |
| STP | Rep_2080_c_0 | Rep_2080_c_0_175 | 148629 | 149171 | + | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | Rep_2080_c_0 | Rep_2080_c_0_176 | 149196 | 150263 | - | GT28 |
Gene ID: Rep_2080_c_0_173
Type: TC
Location: 147528 - 148157 (+)
Type: TC
Location: 147528 - 148157 (+)
Gene ID: Rep_2080_c_0_174
Type: pfam
Location: 148159 - 148575 (+)
Type: pfam
Location: 148159 - 148575 (+)
Gene ID: Rep_2080_c_0_175
Type: STP
Location: 148629 - 149171 (+)
Type: STP
Location: 148629 - 149171 (+)
Gene ID: Rep_2080_c_0_176
Type: CAZyme
Location: 149196 - 150263 (-)
Type: CAZyme
Location: 149196 - 150263 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp003478355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2080_c_0_175 | vegan > omnivore | 1.20563 | 0.03848 |