Cluster: Rep_207_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate: pectin/galactan
- Genome ID: Rep_207
- CGC Family ID: CGCFAM_00031
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_207_c_0 | Rep_207_c_0_855 | 1021482 | 1022693 | - | 2.A.1.7.17 |
| CAZyme | Rep_207_c_0 | Rep_207_c_0_856 | 1022849 | 1024564 | - | GH32 |
| TF | Rep_207_c_0 | Rep_207_c_0_857 | 1024789 | 1027023 | + | HTH_AraC | HTH_AraC |
| TC | Rep_207_c_0 | Rep_207_c_0_858 | 1027218 | 1029614 | + | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_207_c_0 | Rep_207_c_0_859 | 1029566 | 1030333 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_207_c_0 | Rep_207_c_0_860 | 1030405 | 1032144 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_207_c_0 | Rep_207_c_0_861 | 1032380 | 1034413 | - | GH2 |
| NULL(UNKNOWN) | Rep_207_c_0 | Rep_207_c_0_862 | 1034376 | 1034771 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_207_c_0 | Rep_207_c_0_863 | 1034794 | 1035900 | - | GH53 |
| CAZyme | Rep_207_c_0 | Rep_207_c_0_864 | 1036132 | 1037325 | - | GH53 |
| pfam | Rep_207_c_0 | Rep_207_c_0_865 | 1037438 | 1038841 | - | SusE | DUF5111 | DUF5114 |
| TC | Rep_207_c_0 | Rep_207_c_0_866 | 1039025 | 1040608 | - | 8.A.46.1.1 |
| TC | Rep_207_c_0 | Rep_207_c_0_867 | 1040747 | 1043719 | - | 1.B.14.6.1 |
Gene ID: Rep_207_c_0_855
Type: TC
Location: 1021482 - 1022693 (-)
Type: TC
Location: 1021482 - 1022693 (-)
Gene ID: Rep_207_c_0_856
Type: CAZyme
Location: 1022849 - 1024564 (-)
Type: CAZyme
Location: 1022849 - 1024564 (-)
Gene ID: Rep_207_c_0_857
Type: TF
Location: 1024789 - 1027023 (+)
Type: TF
Location: 1024789 - 1027023 (+)
Gene ID: Rep_207_c_0_858
Type: TC
Location: 1027218 - 1029614 (+)
Type: TC
Location: 1027218 - 1029614 (+)
Gene ID: Rep_207_c_0_859
Type:
Location: 1029566 - 1030333 (+)
Type:
Location: 1029566 - 1030333 (+)
Gene ID: Rep_207_c_0_860
Type: pfam
Location: 1030405 - 1032144 (+)
Type: pfam
Location: 1030405 - 1032144 (+)
Gene ID: Rep_207_c_0_861
Type: CAZyme
Location: 1032380 - 1034413 (-)
Type: CAZyme
Location: 1032380 - 1034413 (-)
Gene ID: Rep_207_c_0_862
Type:
Location: 1034376 - 1034771 (-)
Type:
Location: 1034376 - 1034771 (-)
Gene ID: Rep_207_c_0_863
Type: CAZyme
Location: 1034794 - 1035900 (-)
Type: CAZyme
Location: 1034794 - 1035900 (-)
Gene ID: Rep_207_c_0_864
Type: CAZyme
Location: 1036132 - 1037325 (-)
Type: CAZyme
Location: 1036132 - 1037325 (-)
Gene ID: Rep_207_c_0_865
Type: pfam
Location: 1037438 - 1038841 (-)
Type: pfam
Location: 1037438 - 1038841 (-)
Gene ID: Rep_207_c_0_866
Type: TC
Location: 1039025 - 1040608 (-)
Type: TC
Location: 1039025 - 1040608 (-)
Gene ID: Rep_207_c_0_867
Type: TC
Location: 1040747 - 1043719 (-)
Type: TC
Location: 1040747 - 1043719 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900544495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.