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Cluster: Rep_2060_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_26 Rep_2060_c_26_32 41691 42635 + 3.A.1.1.10
TC Rep_2060_c_26 Rep_2060_c_26_33 42665 43534 + 3.A.1.1.10
NULL(UNKNOWN) Rep_2060_c_26 Rep_2060_c_26_34 43582 45291 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2060_c_26 Rep_2060_c_26_35 45499 48621 + GH2
CAZyme Rep_2060_c_26 Rep_2060_c_26_36 48623 49705 + CE15
CAZyme Rep_2060_c_26 Rep_2060_c_26_37 49789 52050 + GH95
CAZyme Rep_2060_c_26 Rep_2060_c_26_38 52067 54784 + GH138
CAZyme Rep_2060_c_26 Rep_2060_c_26_39 54795 56141 + GH29
CAZyme Rep_2060_c_26 Rep_2060_c_26_40 56155 58200 + GH42
CAZyme Rep_2060_c_26 Rep_2060_c_26_41 58347 60653 + GH31_4
Gene ID: Rep_2060_c_26_32
Type: TC
Location: 41691 - 42635 (+)
Gene ID: Rep_2060_c_26_33
Type: TC
Location: 42665 - 43534 (+)
Gene ID: Rep_2060_c_26_34
Type:
Location: 43582 - 45291 (+)
Gene ID: Rep_2060_c_26_35
Type: CAZyme
Location: 45499 - 48621 (+)
Gene ID: Rep_2060_c_26_36
Type: CAZyme
Location: 48623 - 49705 (+)
Gene ID: Rep_2060_c_26_37
Type: CAZyme
Location: 49789 - 52050 (+)
Gene ID: Rep_2060_c_26_38
Type: CAZyme
Location: 52067 - 54784 (+)
Gene ID: Rep_2060_c_26_39
Type: CAZyme
Location: 54795 - 56141 (+)
Gene ID: Rep_2060_c_26_40
Type: CAZyme
Location: 56155 - 58200 (+)
Gene ID: Rep_2060_c_26_41
Type: CAZyme
Location: 58347 - 60653 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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