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Cluster: Rep_2060_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_10 Rep_2060_c_10_42 61988 65377 - CBM13 | GH29
NULL(UNKNOWN) Rep_2060_c_10 Rep_2060_c_10_43 65688 66425 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2060_c_10 Rep_2060_c_10_44 66595 67434 + RrnaAD | PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_25
TC Rep_2060_c_10 Rep_2060_c_10_45 67380 68171 - 3.A.1.5.12
TC Rep_2060_c_10 Rep_2060_c_10_46 68168 68848 - 3.A.1.5.20
TC Rep_2060_c_10 Rep_2060_c_10_47 68850 69671 - 3.A.1.5.15
TC Rep_2060_c_10 Rep_2060_c_10_48 69655 70623 - 3.A.1.5.16
TC Rep_2060_c_10 Rep_2060_c_10_49 70691 72409 - 3.A.1.5.6
pfam Rep_2060_c_10 Rep_2060_c_10_50 72709 76041 - Alpha_L_fucos
CAZyme Rep_2060_c_10 Rep_2060_c_10_51 76025 78394 - GH141
pfam Rep_2060_c_10 Rep_2060_c_10_52 78715 79188 - RVT_1
TC Rep_2060_c_10 Rep_2060_c_10_53 79370 80248 - 3.A.1.1.34
TC Rep_2060_c_10 Rep_2060_c_10_54 80238 81131 - 3.A.1.1.42
STP Rep_2060_c_10 Rep_2060_c_10_55 81241 82515 - SBP_bac_1
TF Rep_2060_c_10 Rep_2060_c_10_56 82640 84217 - HTH_AraC | HTH_AraC
TC Rep_2060_c_10 Rep_2060_c_10_57 84275 86017 - 8.A.59.2.1
Gene ID: Rep_2060_c_10_42
Type: CAZyme
Location: 61988 - 65377 (-)
Gene ID: Rep_2060_c_10_43
Type:
Location: 65688 - 66425 (-)
Gene ID: Rep_2060_c_10_44
Type: pfam
Location: 66595 - 67434 (+)
Gene ID: Rep_2060_c_10_45
Type: TC
Location: 67380 - 68171 (-)
Gene ID: Rep_2060_c_10_46
Type: TC
Location: 68168 - 68848 (-)
Gene ID: Rep_2060_c_10_47
Type: TC
Location: 68850 - 69671 (-)
Gene ID: Rep_2060_c_10_48
Type: TC
Location: 69655 - 70623 (-)
Gene ID: Rep_2060_c_10_49
Type: TC
Location: 70691 - 72409 (-)
Gene ID: Rep_2060_c_10_50
Type: pfam
Location: 72709 - 76041 (-)
Gene ID: Rep_2060_c_10_51
Type: CAZyme
Location: 76025 - 78394 (-)
Gene ID: Rep_2060_c_10_52
Type: pfam
Location: 78715 - 79188 (-)
Gene ID: Rep_2060_c_10_53
Type: TC
Location: 79370 - 80248 (-)
Gene ID: Rep_2060_c_10_54
Type: TC
Location: 80238 - 81131 (-)
Gene ID: Rep_2060_c_10_55
Type: STP
Location: 81241 - 82515 (-)
Gene ID: Rep_2060_c_10_56
Type: TF
Location: 82640 - 84217 (-)
Gene ID: Rep_2060_c_10_57
Type: TC
Location: 84275 - 86017 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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