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Cluster: Rep_2060_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_7 Rep_2060_c_7_54 67494 68870 + 2.A.66.1.32
NULL(UNKNOWN) Rep_2060_c_7 Rep_2060_c_7_55 68970 69929 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2060_c_7 Rep_2060_c_7_56 70043 72511 - FtsX | FtsX
TC Rep_2060_c_7 Rep_2060_c_7_57 72508 73182 - 3.A.1.125.3
STP Rep_2060_c_7 Rep_2060_c_7_58 73289 74443 - HATPase_c | HisKA
TF Rep_2060_c_7 Rep_2060_c_7_59 74416 75093 - Trans_reg_C
TC Rep_2060_c_7 Rep_2060_c_7_60 75167 76498 - 2.A.66.1.33
pfam Rep_2060_c_7 Rep_2060_c_7_61 76647 77207 - Sod_Cu
pfam Rep_2060_c_7 Rep_2060_c_7_62 77306 77839 - Isochorismatase
CAZyme Rep_2060_c_7 Rep_2060_c_7_63 77956 83412 - GH95
Gene ID: Rep_2060_c_7_54
Type: TC
Location: 67494 - 68870 (+)
Gene ID: Rep_2060_c_7_55
Type:
Location: 68970 - 69929 (-)
Gene ID: Rep_2060_c_7_56
Type: pfam
Location: 70043 - 72511 (-)
Gene ID: Rep_2060_c_7_57
Type: TC
Location: 72508 - 73182 (-)
Gene ID: Rep_2060_c_7_58
Type: STP
Location: 73289 - 74443 (-)
Gene ID: Rep_2060_c_7_59
Type: TF
Location: 74416 - 75093 (-)
Gene ID: Rep_2060_c_7_60
Type: TC
Location: 75167 - 76498 (-)
Gene ID: Rep_2060_c_7_61
Type: pfam
Location: 76647 - 77207 (-)
Gene ID: Rep_2060_c_7_62
Type: pfam
Location: 77306 - 77839 (-)
Gene ID: Rep_2060_c_7_63
Type: CAZyme
Location: 77956 - 83412 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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