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Cluster: Rep_2060_CGC122

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_139 Rep_2060_c_139_2 1110 2534 - 9.B.18.1.2
pfam Rep_2060_c_139 Rep_2060_c_139_3 2582 3331 - CpsB_CapC
CAZyme Rep_2060_c_139 Rep_2060_c_139_4 3365 4441 - GT2
pfam Rep_2060_c_139 Rep_2060_c_139_5 4441 5076 - Big_3 | Bact_surface_Ig-like
TC Rep_2060_c_139 Rep_2060_c_139_6 5100 6551 - 8.A.3.2.3
TC Rep_2060_c_139 Rep_2060_c_139_7 6579 7967 - 8.A.3.2.2
NULL(UNKNOWN) Rep_2060_c_139 Rep_2060_c_139_8 7978 8892 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_2060_c_139 Rep_2060_c_139_9 8928 10265 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2060_c_139 Rep_2060_c_139_10 10302 11306 - GT2
Gene ID: Rep_2060_c_139_2
Type: TC
Location: 1110 - 2534 (-)
Gene ID: Rep_2060_c_139_3
Type: pfam
Location: 2582 - 3331 (-)
Gene ID: Rep_2060_c_139_4
Type: CAZyme
Location: 3365 - 4441 (-)
Gene ID: Rep_2060_c_139_5
Type: pfam
Location: 4441 - 5076 (-)
Gene ID: Rep_2060_c_139_6
Type: TC
Location: 5100 - 6551 (-)
Gene ID: Rep_2060_c_139_7
Type: TC
Location: 6579 - 7967 (-)
Gene ID: Rep_2060_c_139_8
Type:
Location: 7978 - 8892 (-)
Gene ID: Rep_2060_c_139_9
Type:
Location: 8928 - 10265 (-)
Gene ID: Rep_2060_c_139_10
Type: CAZyme
Location: 10302 - 11306 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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