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Cluster: Rep_198_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_198_c_4 Rep_198_c_4_16 10954 12150 + 9.B.149.1.4
pfam Rep_198_c_4 Rep_198_c_4_17 12147 13250 + Lip_A_acyltrans
TF Rep_198_c_4 Rep_198_c_4_18 13221 14045 - LytTR
CAZyme Rep_198_c_4 Rep_198_c_4_19 14864 16369 + GH125
CAZyme Rep_198_c_4 Rep_198_c_4_20 16458 18743 + GH92
TC Rep_198_c_4 Rep_198_c_4_21 18938 22123 + 1.B.14.6.1
pfam Rep_198_c_4 Rep_198_c_4_22 22151 23914 + SusD_RagB | SusD-like_3
TC Rep_198_c_4 Rep_198_c_4_23 24144 27314 + 1.B.14.6.1
pfam Rep_198_c_4 Rep_198_c_4_24 27362 28975 + SusD_RagB | SusD-like_3
pfam Rep_198_c_4 Rep_198_c_4_25 29006 30166 + SusE
CAZyme Rep_198_c_4 Rep_198_c_4_26 30186 31349 + GH76
Gene ID: Rep_198_c_4_16
Type: TC
Location: 10954 - 12150 (+)
Gene ID: Rep_198_c_4_17
Type: pfam
Location: 12147 - 13250 (+)
Gene ID: Rep_198_c_4_18
Type: TF
Location: 13221 - 14045 (-)
Gene ID: Rep_198_c_4_19
Type: CAZyme
Location: 14864 - 16369 (+)
Gene ID: Rep_198_c_4_20
Type: CAZyme
Location: 16458 - 18743 (+)
Gene ID: Rep_198_c_4_21
Type: TC
Location: 18938 - 22123 (+)
Gene ID: Rep_198_c_4_22
Type: pfam
Location: 22151 - 23914 (+)
Gene ID: Rep_198_c_4_23
Type: TC
Location: 24144 - 27314 (+)
Gene ID: Rep_198_c_4_24
Type: pfam
Location: 27362 - 28975 (+)
Gene ID: Rep_198_c_4_25
Type: pfam
Location: 29006 - 30166 (+)
Gene ID: Rep_198_c_4_26
Type: CAZyme
Location: 30186 - 31349 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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