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Cluster: Rep_198_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_198_c_2 Rep_198_c_2_4 2893 5877 + 1.B.14.6.1
TC Rep_198_c_2 Rep_198_c_2_5 5909 7648 + 8.A.46.1.1
pfam Rep_198_c_2 Rep_198_c_2_6 7865 9076 + SusF_SusE | SusF_SusE | SusF_SusE
CAZyme Rep_198_c_2 Rep_198_c_2_7 9171 10622 + GH27
CAZyme Rep_198_c_2 Rep_198_c_2_8 10657 12078 + GH27
CAZyme Rep_198_c_2 Rep_198_c_2_9 12262 14406 + GH97
pfam Rep_198_c_2 Rep_198_c_2_10 14857 17130 - KH_1 | S1 | RNase_PH | RNase_PH | RNase_PH_C | RNase_PH_C | PNPase
TC Rep_198_c_2 Rep_198_c_2_11 17695 18093 + 1.A.43.1.13
Gene ID: Rep_198_c_2_4
Type: TC
Location: 2893 - 5877 (+)
Gene ID: Rep_198_c_2_5
Type: TC
Location: 5909 - 7648 (+)
Gene ID: Rep_198_c_2_6
Type: pfam
Location: 7865 - 9076 (+)
Gene ID: Rep_198_c_2_7
Type: CAZyme
Location: 9171 - 10622 (+)
Gene ID: Rep_198_c_2_8
Type: CAZyme
Location: 10657 - 12078 (+)
Gene ID: Rep_198_c_2_9
Type: CAZyme
Location: 12262 - 14406 (+)
Gene ID: Rep_198_c_2_10
Type: pfam
Location: 14857 - 17130 (-)
Gene ID: Rep_198_c_2_11
Type: TC
Location: 17695 - 18093 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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